Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30i21
(207 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 1.0
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 25 1.4
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 24 3.2
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 23 4.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 23 7.3
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 23 7.3
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 23 7.3
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 23 7.3
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 22 9.6
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 22 9.6
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 22 9.6
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 168 SFTKIFSVDFLEDPEKLRPVALFHFPIXI 82
SF IFS F E+PE + F P+ +
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELPLQV 1864
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 143 TFWRIPRSYVQWLCFIFPLXYIKXR--RXTK*PK 48
+FW+IP ++ C +PL Y+ + R K PK
Sbjct: 109 SFWQIPSPWMYTRCSDWPLSYLPNQVIRRPKCPK 142
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 23.8 bits (49), Expect = 3.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 148 SGLFGGSREVTSSGFVSFSHXYTLXPEEXLNSQNKTNHT 32
SGLF REV S + L E + +N+ N T
Sbjct: 157 SGLFSNQREVESLEQLVHEQLNKLNTESKMEFENRKNDT 195
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 154 FFSGLFGGSREVTSSGFVS 98
FF+GLF G+ V+S G ++
Sbjct: 153 FFAGLFAGAPVVSSGGVMA 171
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 150 SVDFLEDPEKLRPVALF 100
S FLE E +RP+A+F
Sbjct: 1021 SFRFLEKREDIRPIAMF 1037
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 115 SSGFVSFSHXYTLXPEEXLNS 53
S GF SF + + P+ LNS
Sbjct: 171 SEGFSSFEDDFEIDPDTDLNS 191
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 202 YGMKYNLSKMXVIY*DFFSGLFGGSREVTSSGFVSF 95
YG KY +K+ I S L+ + ++S F F
Sbjct: 362 YGQKYGAAKVWNIPTVHHSWLYSSFKNLSSQAFTDF 397
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 170 GHLLRFFQWTFWRIPRSYVQ 111
G + FFQW FW ++ Q
Sbjct: 87 GLCVSFFQWYFWGYSLAFSQ 106
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 95 K*NKATGRNFSG--SSKKSTEKILVNDXHFTE 184
K N+AT NFSG S K E + N+ + E
Sbjct: 1474 KENRATESNFSGVDSMSKERENVSSNEDNSPE 1505
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 187 NLSKMXVIY*DFFSGLFGGSREV 119
+LSK V D+F G FG S+ +
Sbjct: 126 SLSKAKVELLDYFLGSFGNSQRI 148
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 202 YGMKYNLSKMXVIY*DFFSGLFGGSREVTSSGFVSF 95
Y NLS M + + GL G + E+ F+SF
Sbjct: 427 YVFTNNLSTMIHVAKELEVGLVGANIEMVDEPFISF 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,875
Number of Sequences: 5004
Number of extensions: 11026
Number of successful extensions: 32
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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