Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30i21
         (207 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0408 + 17352110-17352619,17352709-17352834,17353036-173532...    26   4.8  
07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850...    25   6.3  
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698...    25   8.4  

>09_04_0408 +
           17352110-17352619,17352709-17352834,17353036-17353209,
           17353669-17353830,17353998-17354140,17354835-17354910,
           17355445-17355589,17355847-17355896,17356001-17356078,
           17357153-17357314,17357406-17357669,17357929-17358033,
           17358158-17358247,17358344-17358346
          Length = 695

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 143 STEKILVNDXHFTEIIFHPIS 205
           + +KIL+ D +FT +IFH I+
Sbjct: 594 AADKILLLDSYFTVVIFHGIT 614


>07_01_1004 +
           8500584-8501881,8502194-8502402,8503024-8503266,
           8503381-8503697,8503891-8504250
          Length = 808

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 112 SGFVSFSHXYTLXPEEXLNSQNKTNHTTS 26
           S  + F +  +L PE+ L S N +NH  S
Sbjct: 38  SSLLEFKNAISLDPEQSLISWNSSNHLCS 66


>02_02_0120 +
           6984482-6984643,6984748-6984797,6984936-6984996,
           6985574-6985669,6985754-6985903,6986208-6986339,
           6986641-6986768,6987285-6987327,6987935-6988018,
           6989049-6989090,6989264-6989334,6989621-6989674,
           6989789-6989894,6990038-6990106,6990824-6990967,
           6992038-6992113,6992295-6992353
          Length = 508

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 134 RIPRSYVQWLCFIFPLXYIKXR 69
           R+P  Y  W+  I PL Y K R
Sbjct: 104 RLPADYAVWMGEIKPLSYFKDR 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,869,325
Number of Sequences: 37544
Number of extensions: 64683
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)