Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30i21
         (207 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   1.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   1.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   3.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   4.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   6.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 107 LCFIFPLXYIKXR 69
           LCF++PL + + R
Sbjct: 130 LCFVYPLDFARTR 142


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 107 LCFIFPLXYIKXR 69
           LCF++PL + + R
Sbjct: 130 LCFVYPLDFARTR 142


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 3.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 189 IISVKWXSFTKIFSVD 142
           I+ + W S+ K+F  D
Sbjct: 100 ILHILWTSYKKVFMKD 115


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.8 bits (39), Expect = 3.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 189 IISVKWXSFTKIFSVD 142
           I+ + W S+ K+F  D
Sbjct: 83  ILHILWTSYKKVFMKD 98


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 55  SQNKTNHTTSLLAFPP 8
           S+  T++TTS+ +F P
Sbjct: 621 SRENTSNTTSMESFKP 636


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 128 GSSKKSTEKILVNDXHFTEI 187
           G  KKST K      HF +I
Sbjct: 430 GRDKKSTSKKPRRKFHFKQI 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,885
Number of Sequences: 438
Number of extensions: 655
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)