Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30i16
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    28   1.0  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   7.1  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    25   9.3  

>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 429 LYTKIHVSILTNCQTANGH*HRIMHNCYVMVINLVYYLI 545
           LYTK H+ + T C  A  H   +    Y  V+N+V  LI
Sbjct: 157 LYTKSHLMLATACLIALRHNPSLKARIYTDVLNIVDRLI 195


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 223 CSKHKTTLLPHCWKAVQDFRMQILY 149
           C     T  PH WKAV   R ++L+
Sbjct: 147 CPDCARTYTPHIWKAVCQVRQKVLH 171


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 250 SIIISCHHCCSKHKTTLLPHCWKAVQD-FRMQILY 149
           SI+   HHC     T L  H W+  +  +  Q+ Y
Sbjct: 269 SIVFRLHHCLQYTNTDLEMHIWEEKETIYEQQMTY 303


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 128 N*QYCMYLVCGDLFSTVIN*LISNLFRINHDLQTYL 21
           N Q  M    GD+     N L++N+  IN+D   YL
Sbjct: 42  NQQGVMLFSTGDIRIGAYNYLVNNVTEINNDTDAYL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,159
Number of Sequences: 5004
Number of extensions: 51657
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)