Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30i16
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0257 - 16255063-16255183,16255258-16255334,16255861-162559...    31   1.0  
03_01_0507 + 3827500-3827622,3827912-3828064                           29   3.2  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    29   3.2  
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560...    28   5.5  
11_02_0147 - 8791117-8792502                                           28   7.3  
02_05_0784 + 31726453-31726563,31726820-31726897,31727307-317278...    27   9.7  

>10_08_0257 -
           16255063-16255183,16255258-16255334,16255861-16255973,
           16256006-16256016,16256328-16256337,16256423-16256486,
           16256582-16256646,16257339-16257474
          Length = 198

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +2

Query: 299 KIDLPEGTHIIGRGKFIVNDAEDMRVSRNHAEIEVTDTCVILKSLHQNPCFYIDKLS 469
           K+DLPE   + G  + I  +   M  S+ +  + V DTC+   +L   P  YID LS
Sbjct: 43  KLDLPE---LQGEPEDISKEKARMAASQVNGPVLVEDTCLCFNALKGLPGPYIDLLS 96


>03_01_0507 + 3827500-3827622,3827912-3828064
          Length = 91

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 377 SRNHAEIEVTDTCVILKSLHQNPCFYIDKLSNSKRTLTQNNAQ 505
           SR+ A   + +TC  +KSLH+      D+LS    T+  N+ Q
Sbjct: 40  SRSSASKLLKETCSYIKSLHREVDDLSDRLSELMSTMDNNSPQ 82


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 347  IVNDAEDMRVSRNHAEIEVTDTCVILKSLHQNPCFYID 460
            +VN   +  +S +  E +  D C  L SLH+N  F +D
Sbjct: 1496 VVNPFRNKELSPSFLEKQYRDACQALGSLHENITFLVD 1533


>01_05_0343 + 21155237-21155496,21155596-21155842,21155939-21156064,
            21156291-21156428,21156513-21156650,21156756-21157013,
            21157404-21157541,21158023-21158092,21158267-21158480,
            21158614-21158719,21159844-21160077,21160836-21161000,
            21161083-21161232,21161308-21161399,21161631-21161712,
            21161800-21161883,21161980-21162096,21162179-21162289,
            21162698-21162892,21164495-21164575,21165671-21165720,
            21165978-21165990,21166518-21166600,21166693-21166833,
            21166879-21166936,21167023-21167072,21167474-21167582,
            21167666-21167727,21168321-21168363
          Length = 1204

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 566  ILIQTNMYQVVYQIYHHYIAIVHYSVLMSVCCLTICQYRNMDFGVKTL 423
            + I ++  +V  QI  H + ++H  +L   CC+ +C     D  +K++
Sbjct: 1016 VFIPSHYKKVHVQI--HLVLLIHLFLLSIACCVDLCMRFTSDVKIKSI 1061


>11_02_0147 - 8791117-8792502
          Length = 461

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 328 HRQRKVYCK*CRRYEGIKKSCR 393
           H Q++++C  CR Y  + + C+
Sbjct: 112 HSQQRIFCSKCRSYSHLSRDCK 133


>02_05_0784 +
           31726453-31726563,31726820-31726897,31727307-31727843,
           31728225-31728305,31728394-31728457,31728738-31728825,
           31728934-31729018,31729103-31729186
          Length = 375

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/77 (22%), Positives = 32/77 (41%)
 Frame = +2

Query: 404 TDTCVILKSLHQNPCFYIDKLSNSKRTLTQNNAQLLCNGDKFGILPDTYWFELIWCSSDV 583
           +++C +  +LH NP  Y    +N+  T+   +   L  G  F +  D         +S+ 
Sbjct: 271 SNSCFVFTNLHSNPSIYRPTGANNYFTVCSTDYLALGGGGHFALYLDADLLSGSSSNSET 330

Query: 584 MKNDVTSNSTPADNKEI 634
             N   S+S     K++
Sbjct: 331 FNNMCLSHSPDFAVKDV 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,208
Number of Sequences: 37544
Number of extensions: 274645
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)