Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30i06
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 33 0.14
08_02_0710 + 20275834-20276352,20276970-20277140,20277692-202777... 32 0.32
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 30 1.3
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 2.2
01_06_1034 + 33962813-33963802 29 3.0
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 3.9
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995... 28 6.8
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 27 9.0
08_02_0056 + 11751585-11751672,11751741-11752060,11755363-117554... 27 9.0
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 27 9.0
07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672 27 9.0
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 27 9.0
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 9.0
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 271 AKFYNVIDFCKGLE-IAHDDILDCNWD 348
A+FYNV C +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330
>08_02_0710 +
20275834-20276352,20276970-20277140,20277692-20277745,
20277848-20277934
Length = 276
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 460 LMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKTEYKQRKIYG 603
++ LN N++ + L T G RD+ K+E + + K E K+R I G
Sbjct: 146 MVHLNAQNQAAVIGILYTIGTRDEFLQKLEPYIIEISKQEGKERVIIG 193
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +1
Query: 439 KQGLLKILMRLNFDNKSNALLHLQTEGERD---DLRDKIESVL-KHVKKTEYKQRKI 597
K +L+ + LN DN+ L L+ GERD +L DK E +L KH E+ + K+
Sbjct: 338 KISILEKAVELNPDNEELLLYLLKAYGERDSTQNLLDKWEQILMKHPDSWEFSRFKV 394
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 565 HVLKQIQFCRANHHARLQFEGAATRCFCCQ 476
H+LK++ C+ +H R QFE FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 400 WISACEK*FRLNGKLDRCPNCN 335
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 468
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>03_02_0628 +
9957385-9957888,9957985-9958111,9958541-9958608,
9958695-9958772,9958885-9958949,9959130-9959196,
9959344-9959526,9959690-9959746,9959857-9959952,
9960061-9960219
Length = 467
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 382 FHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNK--SNALLHLQTEGE--RDDLRDKIE 549
+HK ++RD L + A K+ L + NK + TEG+ R +L DK
Sbjct: 196 YHKVVAERDAGKLLSSIAVKEKLESLCREFQRQNKMLKEECRRVSTEGQNMRMELSDKFN 255
Query: 550 SVLKHV 567
+ +K V
Sbjct: 256 NAIKDV 261
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 502 AATRCFCCQNLTASKFSTTPAWSRTMRPTS*DRVWISACE 383
AA RCF Q T+S ++P WS RP + + + C+
Sbjct: 49 AAARCFATQPATSSLRDSSPNWSN--RPPK-ETILLDGCD 85
>08_02_0056 +
11751585-11751672,11751741-11752060,11755363-11755483,
11755950-11756137,11756224-11756355,11756535-11756577,
11757298-11757395
Length = 329
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 472 NFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKTEYKQRKI 597
+ D N L TE ER L +++ LKH K YK++ I
Sbjct: 206 SLDGADNMGFGLPTESERS-LMERVRQELKHELKQGYKEKLI 246
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Frame = +1
Query: 427 LFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKH--------VKKTEY 582
+F +Q L + + N D K + + E++D + E VL + K Y
Sbjct: 1911 IFFERQKLPHEIFKHNVDEKRQFFTDINMDSEKNDAEVQAEGVLNSRLQNLTHTLDKVRY 1970
Query: 583 KQRKIYGHPRN 615
R I+G P+N
Sbjct: 1971 VMRCIFGDPKN 1981
>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
Length = 641
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +1
Query: 343 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 522
W+ D ++ +++ ++R G +FA GL K L L+ +S A ++ +
Sbjct: 36 WEEDNDGGFKNVLTNQKTNERPPPLKGGIFADDMGLGKTLTLLSLIGRSKA-RNVGGKKA 94
Query: 523 RDDLRDKIESVLKHVKKT 576
R R K+E ++ +T
Sbjct: 95 RGAKRRKVEEAVEEESRT 112
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 439 KQGL--LKILMRLNFDNKSNALLHLQTEGER--DDLRDKIESVLKHVKKTEYKQRKIYGH 606
K+GL L+ L+ + S L+ L G+ D+L+ +E+ V+ T K+ YGH
Sbjct: 266 KEGLDILEELITFYSSHYSANLMQLVVYGKESLDNLQTLVENKFSDVRNTGRKRFSFYGH 325
Query: 607 P 609
P
Sbjct: 326 P 326
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 199 IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQV 360
++ W +F+ + K R + D + K + +I+ + HDDI+ C + S ++
Sbjct: 2833 VMIWHAFRGKSADKKSRNANYDLSTKDHVIIESPYHILCGHDDIITCLFVSTEL 2886
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,006,472
Number of Sequences: 37544
Number of extensions: 232966
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -