Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30i04
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 322 1e-88
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 320 6e-88
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 319 1e-87
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.84
11_06_0087 - 19919224-19922304 29 2.6
04_03_1015 - 21734381-21736534 29 2.6
02_05_0202 + 26708049-26709074 29 2.6
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.4
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 4.5
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.5
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.0
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 7.9
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 7.9
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 28 7.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 322 bits (792), Expect = 1e-88
Identities = 145/214 (67%), Positives = 174/214 (81%)
Frame = +1
Query: 31 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 210
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 211 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 390
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 391 KLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLC 570
KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Query: 571 MITGGRNLGRVGTIVSRERHPGSFDIVHIKGLHG 672
M+TGGRN GRVG I SRE+H GSF+ +H++ G
Sbjct: 198 MVTGGRNTGRVGVIKSREKHKGSFETIHVEDALG 231
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 320 bits (786), Expect = 6e-88
Identities = 142/215 (66%), Positives = 175/215 (81%)
Frame = +1
Query: 28 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 207
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 208 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 387
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 388 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 567
+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 568 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKGLHG 672
M+TGGRN GRVG I +RE+H GSF+ +H++ G
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALG 215
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 319 bits (784), Expect = 1e-87
Identities = 141/215 (65%), Positives = 175/215 (81%)
Frame = +1
Query: 28 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 207
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 208 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 387
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 388 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 567
+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 568 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKGLHG 672
M+TGGRN GRVG I +RE+H GSF+ +H++ G
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALG 215
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 172 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 71
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 422 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 535
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +2
Query: 386 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 511
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>02_05_0202 + 26708049-26709074
Length = 341
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 681 KVCPVESLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPG 556
K P E + V +G +L GH +H A+ H Q PG
Sbjct: 258 KAPPHECPYCYRVFASGQALGGHKKSHVCSAAAAAAHAQTPG 299
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 185 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 57
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 144 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 31
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 69 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 233
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 322 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 426
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.9 bits (59), Expect = 7.9
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Frame = +2
Query: 368 SPLRRLSTSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS*TLQLRRLWTS- 544
+P RR +W L +FR + R+MA SA++ L T + + +S
Sbjct: 765 APGRRKEEPTCGPQIWDVGLHVFRYFERVMATESAVR--LIGGTGSGNWSKDFGAFDSSL 822
Query: 545 SSLS-PGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRDSTGH 676
SLS G + +G W S P R AP ++ S + GH
Sbjct: 823 GSLSGEGLGFVDNNSGVYGGWRESVPNRSGSAPPSMEGSLAALGH 867
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 448 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 582
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 555 VRELVYDHGRP*LGACG-HHRVPRETSRLLRHCAHQ-GTPRDT 677
V +LVYDHGR + A G RVP + HQ T DT
Sbjct: 95 VSQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQLATATDT 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,425,873
Number of Sequences: 37544
Number of extensions: 484384
Number of successful extensions: 1491
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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