Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30i01
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   2.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.5  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    25   7.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.7  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   9.7  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   9.7  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 109 KIMWNASRFCVSSLRRGHAN 50
           K + +ASRFCV SL+R  AN
Sbjct: 575 KYLPSASRFCVESLKRQKAN 594


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 543 FNLAVLGSQLGPFSFQSLHIV*VYNAIVD 457
           F LA     +G FSFQ++H+   YN + +
Sbjct: 44  FELATNRKVVGKFSFQNVHLENEYNILTE 72


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 550 FYVQLGCSWLAARTVLFPIAPHR 482
           + +  GCSW AA  +L  + P+R
Sbjct: 15  YALAFGCSWYAAHKLLSTLDPYR 37


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 332  LQKHLYVELSIIILT*HLKHTAWLQSIEVTNEE 234
            L+KH  +E   I    + K+  W QSIE++ ++
Sbjct: 1494 LEKHSLLEFRRIAAYIYRKNKRWTQSIELSKQD 1526


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 274 TQHGYNQSKSQTKNLR 227
           T HGYNQ+K   K++R
Sbjct: 82  TVHGYNQAKKLAKSIR 97


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 415 SIKQHWRELLENNTVNNRIIDLNDV 489
           ++ Q W +LL  +  NNRI  L+D+
Sbjct: 234 TLAQTWPKLLNLSLANNRITSLSDL 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,431
Number of Sequences: 5004
Number of extensions: 39880
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)