Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30i01
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    40   0.002
AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical ...    35   0.045
AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical ...    33   0.24 
AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL132948-9|CAC51067.1|  256|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    28   5.1  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 190 CNICFTTLKDTKNVDSSFVT-SIDCNHAVCFKCYVRIIMDNSTYKC-FC 330
           C ICF    DT   DS  +  ++ C HA+C KC +  +++NST +C FC
Sbjct: 6   CKICFDRFSDT---DSEHIPRNLTCGHALCHKC-ITAMVNNSTVECPFC 50


>AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical
           protein Y6D1A.2 protein.
          Length = 272

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 190 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 324
           C IC    +DTK         +DC H +C +C  RI      +KC
Sbjct: 183 CEICSREYEDTKE---RVPRVLDCGHTICHECITRIHKPTEPFKC 224


>AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical
           protein ZK1240.3 protein.
          Length = 304

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +1

Query: 190 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKCFCSASSS--DFRVY 360
           C IC    K+  N+D +    I  C H++C  C  ++I ++  Y  FC  ++   D +V 
Sbjct: 6   CEIC---CKEYSNIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFCRETTKIRDGKVE 62

Query: 361 NKHGYVEFMPLTLIRNRDSIKQ 426
           N       M    I    + KQ
Sbjct: 63  NLKKNFGLMKAIEIMKNSTTKQ 84


>AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK1240.8 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 190 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKC 324
           C +C    +D  N+D S    +  C H++C  C V++I  NS   C
Sbjct: 6   CEVCN---EDYSNLDESRAPRVLKCGHSICQNCAVKLI-SNSVILC 47


>Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical
           protein Y53C12B.6 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 262 NHAVCFKCYVRIIMDNSTYKC---FCSASSSDFRVYNKHGYVEFMPLTLIRNR 411
           NH V FKC +RI + N + +C    CS + S   +  K   V   P  L++ +
Sbjct: 258 NHIVYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFEHPFLLLKQK 310


>AL132948-9|CAC51067.1|  256|Caenorhabditis elegans Hypothetical
           protein Y39B6A.10 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query: 211 LKDTKNVDSSFVTSIDCNHAVCFKCYVRIIM-DNSTYKCFCSASSSDFRVYNKHGYVEFM 387
           LK T+N++ S +  +    A+C K  V + + D + ++ F   S    R+  K       
Sbjct: 115 LKITENLEKSIIDYL----ALCQKLPVLVTLRDVTEFQIFAQKSEVPLRIQYKK-----R 165

Query: 388 PLTLIRNRDSIKQHWRELLENNTVNNRII 474
            L ++R  +++KQ + ++L N+T    +I
Sbjct: 166 KLKILRISENLKQFFTKMLGNSTSGTHLI 194


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 190 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC-FC 330
           C IC  TL+ +  VD+     + C H++C  C  + +  N    C FC
Sbjct: 134 CEIC--TLEFSSVVDNQIPRILQCGHSICQSCASK-LAKNCVILCPFC 178


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 187 SCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 300
           SC IC+      K +   F     C H +C +C  +++
Sbjct: 115 SCGICYDPFNTGKRIPKVF----PCGHTICLQCIKKLL 148


>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 382 FMPLTLIRNRDSIKQHWRELLENNTVNNRII 474
           F+P+TL  N    K +W   LENN +N  I+
Sbjct: 310 FVPITLEGNVPGRKLYWWWRLENNDINFSIL 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,855,058
Number of Sequences: 27780
Number of extensions: 228980
Number of successful extensions: 606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)