Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h23
(509 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40215-1|AAC50718.1| 478|Homo sapiens synapsin IIb protein. 31 3.1
BC051307-1|AAH51307.1| 582|Homo sapiens synapsin II protein. 31 3.1
AF077737-1|AAC33789.1| 478|Homo sapiens synapsin IIb protein. 31 3.1
AF077671-1|AAC28368.1| 582|Homo sapiens synapsin IIa protein. 31 3.1
AB209088-1|BAD92325.1| 514|Homo sapiens synapsin II isoform IIb... 31 3.1
AB040936-1|BAA96027.2| 4464|Homo sapiens KIAA1503 protein protein. 29 7.1
M34192-1|AAA52711.1| 423|Homo sapiens IVD protein. 29 9.4
BT007145-1|AAP35809.1| 423|Homo sapiens isovaleryl Coenzyme A d... 29 9.4
BC017202-1|AAH17202.1| 423|Homo sapiens isovaleryl Coenzyme A d... 29 9.4
AF191218-1|AAF20182.1| 423|Homo sapiens isovaleryl dehydrogenas... 29 9.4
>U40215-1|AAC50718.1| 478|Homo sapiens synapsin IIb protein.
Length = 478
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 432 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 316
VL ++ K+ Q E+ L AHADG + VD+ L++ T V+
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175
>BC051307-1|AAH51307.1| 582|Homo sapiens synapsin II protein.
Length = 582
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 432 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 316
VL ++ K+ Q E+ L AHADG + VD+ L++ T V+
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175
>AF077737-1|AAC33789.1| 478|Homo sapiens synapsin IIb protein.
Length = 478
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 432 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 316
VL ++ K+ Q E+ L AHADG + VD+ L++ T V+
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175
>AF077671-1|AAC28368.1| 582|Homo sapiens synapsin IIa protein.
Length = 582
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 432 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 316
VL ++ K+ Q E+ L AHADG + VD+ L++ T V+
Sbjct: 135 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 175
>AB209088-1|BAD92325.1| 514|Homo sapiens synapsin II isoform IIb
variant protein.
Length = 514
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 432 VLRNFSFKIVQREYLPSGLNAHADGNHRVDL--LQHFTDVI 316
VL ++ K+ Q E+ L AHADG + VD+ L++ T V+
Sbjct: 171 VLGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVV 211
>AB040936-1|BAA96027.2| 4464|Homo sapiens KIAA1503 protein protein.
Length = 4464
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -1
Query: 314 SMPVVSPVLNQWERLLMESPASIILTASSKVQLPIFKRRIAVTSRSMHDI 165
S+ ++ ++ WERLL E+P ++ A L I + + + +R + I
Sbjct: 673 SLLILFAEIDYWERLLFETPHYVVNVAERAEDLRILRENLLLVARDYNRI 722
>M34192-1|AAA52711.1| 423|Homo sapiens IVD protein.
Length = 423
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/64 (18%), Positives = 29/64 (45%)
Frame = +1
Query: 58 IYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLKIGSCTFDEA 237
+ ++ Y V + +G+ H +++Q +++ Y M+C + + G CT +
Sbjct: 298 VLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDC 357
Query: 238 VKMI 249
+I
Sbjct: 358 AGVI 361
>BT007145-1|AAP35809.1| 423|Homo sapiens isovaleryl Coenzyme A
dehydrogenase protein.
Length = 423
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/64 (18%), Positives = 29/64 (45%)
Frame = +1
Query: 58 IYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLKIGSCTFDEA 237
+ ++ Y V + +G+ H +++Q +++ Y M+C + + G CT +
Sbjct: 298 VLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDC 357
Query: 238 VKMI 249
+I
Sbjct: 358 AGVI 361
>BC017202-1|AAH17202.1| 423|Homo sapiens isovaleryl Coenzyme A
dehydrogenase protein.
Length = 423
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/64 (18%), Positives = 29/64 (45%)
Frame = +1
Query: 58 IYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLKIGSCTFDEA 237
+ ++ Y V + +G+ H +++Q +++ Y M+C + + G CT +
Sbjct: 298 VLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDC 357
Query: 238 VKMI 249
+I
Sbjct: 358 AGVI 361
>AF191218-1|AAF20182.1| 423|Homo sapiens isovaleryl dehydrogenase
protein.
Length = 423
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/64 (18%), Positives = 29/64 (45%)
Frame = +1
Query: 58 IYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLKIGSCTFDEA 237
+ ++ Y V + +G+ H +++Q +++ Y M+C + + G CT +
Sbjct: 298 VLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDC 357
Query: 238 VKMI 249
+I
Sbjct: 358 AGVI 361
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,011,973
Number of Sequences: 237096
Number of extensions: 1303277
Number of successful extensions: 3095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3095
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -