Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h21
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 158 4e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 107 1e-24
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 104 6e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 66 2e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 3e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 7e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 31 0.063
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 29 0.34
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 1.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces... 26 2.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 9.6
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 24 9.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 9.6
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 24 9.6
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 158 bits (383), Expect = 4e-40
Identities = 69/108 (63%), Positives = 88/108 (81%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
IV DNGTGFVK G+A NFP F FPS+VGRPI+RAE K G++ +KD+MVGDEA +RS+L
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLL 65
Query: 307 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
+V YPMENG++R++E+M +WDYTF K+ +DP+ KILLTEPPMNP
Sbjct: 66 QVKYPMENGIIRDFEEMNQLWDYTFF-EKLKIDPRGRKILLTEPPMNP 112
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 107 bits (256), Expect = 1e-24
Identities = 46/106 (43%), Positives = 68/106 (64%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
I DNG+GF+K GFAG + P +FP+ VGR I+ E + KD+ VG EA LR +L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR--IKHERVMPSSIQKDMFVGSEAQNLRGLL 69
Query: 307 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPM 444
++ P+E G+++NW DM +W Y + ++N P+E +LLTEPP+
Sbjct: 70 KIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 104 bits (250), Expect = 6e-24
Identities = 50/108 (46%), Positives = 70/108 (64%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
+V DNG+G K GFAG + P +FPS+VGRP R + + KD VGDEA R +L
Sbjct: 8 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHHGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 307 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
+ YP+E+G+V NW+DM +W +TF +++ V P+E LLTE P+NP
Sbjct: 66 TLKYPIEHGIVNNWDDMEKIWHHTF-YNELRVAPEEHPCLLTEAPLNP 112
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 66.1 bits (154), Expect = 2e-12
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 21/129 (16%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVG--------------RPIIRAENKIGDIDVK- 261
I+ DNGTG+ K G+AG++ P+++FP+++ +P A G + K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 262 -----DLMVGDEASKLRSM-LEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKI 423
D +G++A K S + YP+ +G + NW+ M W + + +P++
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLF-KYLRCEPEDHYF 126
Query: 424 LLTEPPMNP 450
LLTEPP+NP
Sbjct: 127 LLTEPPLNP 135
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 56.0 bits (129), Expect = 3e-09
Identities = 34/109 (31%), Positives = 54/109 (49%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
+V DNG+ ++ G+ G P +F ++V R R ++ + D ++ ++ S
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTSTLVGNDTLI-----EVGSRS 81
Query: 307 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPT 453
P E V+ NW+ M V DYTF K+ +D E I +TEP NPT
Sbjct: 82 IARSPFERNVISNWDLMEQVLDYTF--LKLGIDRMEHPICMTEPLANPT 128
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.2 bits (117), Expect = 7e-08
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSM- 303
+V D G+ + + G+AG P I PS G +R+ D+ ++ V DE +
Sbjct: 13 LVIDPGSCWTRFGYAGEESPMTILPSYYG---VRS-----DVTGRNKYVVDELQIHAPIP 64
Query: 304 -LEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
+EV NG++++WE + W+ K+ V+P E +++TEP NP
Sbjct: 65 GMEVKNGKSNGIIQDWESTLYTWERGL-KEKLQVNPTEYAMMITEPSWNP 113
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.4 bits (105), Expect = 2e-06
Identities = 31/108 (28%), Positives = 48/108 (44%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
IV D G+ + + GF+G + P + PS G D + L + K +
Sbjct: 14 IVIDPGSKWTRIGFSGEDIPKCVLPSYCGE----------FSDGRRLFGEEYIYKSNPGM 63
Query: 307 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
E+ + NG V NW+ +W Y ++ +P E IL+TEP NP
Sbjct: 64 EIKNAIRNGWVENWDVTVDLWRYGL-EQQLKTNPLEHPILITEPFDNP 110
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 31.5 bits (68), Expect = 0.063
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = +1
Query: 121 KVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLR- 297
K IV DNG +K GFAG +V P +K G+ L +G+E +
Sbjct: 6 KTIVLDNGAYHIKAGFAGG--------KVVEIPNCLTRSKDGN----RLFLGNELANCND 53
Query: 298 -SMLEVSYPMENGVVRNWEDMCHVWDYTF-GPSKMNVDPKETKILLTEP 438
+ L+ E G + +W VWD M + +LLT+P
Sbjct: 54 FTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 29.1 bits (62), Expect = 0.34
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 248 SPILFSARMIGLPTMEGNINAGKLLPAKPHFTKPVPLSQ 132
SP F +R IG+ T+ NI++GK P+ + P+S+
Sbjct: 534 SPKPFLSRQIGISTLSSNISSGKGTPSIQDYEIIKPISK 572
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 369 PHVAHVLPITYDPILHRVANFKHGSQFGCFIAHHQVLNINISYF 238
P+ +H+ + + LH + Q+G AH L SYF
Sbjct: 149 PYASHITSLLSNSALHFTTDIVFAGQYGRVFAHKFYLAARSSYF 192
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 1.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 356 MSSQLRTTPFSIG*LTSSMDRSLDASSPTIKSLTSISPILFSARMIGLPTMEGNINA 186
+SS T+P S +TS + S SS + SLTS S ++ PT + +A
Sbjct: 66 LSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHA 122
>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 196
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -2
Query: 243 YFVFCAYDRPA----DHGREYKCRKIATSEATFHKAGTVVANDNFPSFVVH 103
Y + C ++ PA + G + R + + TFHKA + P+F+V+
Sbjct: 118 YMISCTWNAPAAAFEEVGNFFDGRGVDGTLLTFHKANQFLGMKPLPTFMVN 168
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 183 KIATSEATFHKAGTVVANDNFPSFVV 106
+I +SE F+ + V NDNFP F++
Sbjct: 809 RIESSELNFNLK-SAVKNDNFPEFLL 833
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 364 VWDYTFGPSKMNVDPKETKILLTEPPMNP 450
VW+YT S P IL TEP + P
Sbjct: 46 VWNYTSTLSNKLPVPSTNPILTTEPIVGP 74
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 9.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +1
Query: 238 KIGDIDVKDLMVGDEAS------KLRSM--LEVSYPMENGVVRNWE 351
+IG+I D++ D+A LRS LEV PM G++ W+
Sbjct: 1519 QIGEIRPGDIVTFDKAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/33 (27%), Positives = 13/33 (39%)
Frame = +2
Query: 269 WWAMKHPNCDPCLKLATLWRMGSYVIGRTCATC 367
WW + P + T W M S + C +C
Sbjct: 684 WWCLHQPKRMMDRSVKTFWIMSSISLTFLCISC 716
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,405
Number of Sequences: 5004
Number of extensions: 41199
Number of successful extensions: 130
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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