Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h21
(457 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 204 2e-53
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 107 3e-24
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 107 4e-24
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 107 4e-24
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 107 4e-24
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 107 4e-24
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 107 4e-24
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 107 4e-24
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 107 4e-24
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 106 7e-24
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 102 1e-22
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 94 4e-20
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 82 2e-16
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 82 2e-16
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 81 3e-16
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 81 3e-16
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 73 8e-14
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 72 2e-13
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 41 4e-04
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 41 4e-04
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 33 0.13
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ... 31 0.53
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 28 2.8
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 27 4.9
U50072-2|AAQ01530.1| 367|Caenorhabditis elegans Hypothetical pr... 27 4.9
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 27 8.6
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 204 bits (498), Expect = 2e-53
Identities = 82/116 (70%), Positives = 106/116 (91%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
MD +GRKVIV DNGTGFVKCG+AG+NFPA IFPSMVGRPI+R+ ++G+I++KDLMVG+E
Sbjct: 1 MDSQGRKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEE 60
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
S+LR ML+++YPM+NG+VRNW+DM HVWD+TFGP K+++DPKE K+LLTEPP+NP
Sbjct: 61 CSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNP 116
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 107 bits (258), Expect = 3e-24
Identities = 52/116 (44%), Positives = 74/116 (63%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 113
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 107 bits (257), Expect = 4e-24
Identities = 52/116 (44%), Positives = 74/116 (63%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 113
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 107 bits (257), Expect = 4e-24
Identities = 52/116 (44%), Positives = 74/116 (63%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 113
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 107 bits (257), Expect = 4e-24
Identities = 52/116 (44%), Positives = 74/116 (63%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 113
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 107 bits (257), Expect = 4e-24
Identities = 52/116 (44%), Positives = 74/116 (63%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 113
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 107 bits (257), Expect = 4e-24
Identities = 51/116 (43%), Positives = 74/116 (63%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D ++ DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 113
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 107 bits (257), Expect = 4e-24
Identities = 52/116 (44%), Positives = 74/116 (63%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 113
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 107 bits (257), Expect = 4e-24
Identities = 52/116 (44%), Positives = 74/116 (63%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 113
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 106 bits (255), Expect = 7e-24
Identities = 49/108 (45%), Positives = 72/108 (66%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
+V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDEA R +L
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 307 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
+ YP+E+G+V NW+DM +W +TF +++ + P+E +LLTE P+NP
Sbjct: 66 TLKYPIEHGIVTNWDDMEKIWHHTF-YNELRIAPEEHPVLLTEAPLNP 112
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 102 bits (245), Expect = 1e-22
Identities = 45/110 (40%), Positives = 66/110 (60%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
+V DNG+G +K GFAG P F + VGRP G +D D+ +G +A R +
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRV-MAGGLD-GDIFIGPKAESNRGLF 68
Query: 307 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTK 456
+ YPME+G+V NW DM +W+Y FG ++ + P+E +LLT+ P+NP K
Sbjct: 69 SIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLK 118
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 94.3 bits (224), Expect = 4e-20
Identities = 44/98 (44%), Positives = 65/98 (66%)
Frame = +1
Query: 157 KCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSMLEVSYPMENGV 336
+ GFAG + P +FPS+VGRP R + + + KD VGDEA R +L + YP+E+G+
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI 62
Query: 337 VRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNP 450
V NW+DM +W +TF +++ V P+E +LLTE P+NP
Sbjct: 63 VTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 99
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 81.8 bits (193), Expect = 2e-16
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDM 357
A R +L + YP+E+G+V NW+DM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 81.8 bits (193), Expect = 2e-16
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDM 357
A R +L + YP+E+G+V NW+DM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDM 357
A R +L + YP+E+G+V NW+DM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +1
Query: 103 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 282
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 283 ASKLRSMLEVSYPMENGVVRNWEDM 357
A R +L + YP+E+G+V NW+DM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 73.3 bits (172), Expect = 8e-14
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Frame = +1
Query: 130 VCDNGTGFVKCGFAGSNFPAFIFPSMV---------GRPIIRAENKIG-DIDVKDLMVGD 279
V DNGTG+ K G+AG+ P FI PS + +R N++G ID D +GD
Sbjct: 10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGD 69
Query: 280 EA-SKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMN 447
EA S + V YP+ +G+V +W+ M W+ + +P++ LLTEPP+N
Sbjct: 70 EALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIF-KYLRAEPEDHFFLLTEPPLN 125
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 72.1 bits (169), Expect = 2e-13
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = +1
Query: 259 KDLMVGDEASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEP 438
KD VGDEA R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE
Sbjct: 7 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEA 65
Query: 439 PMNP 450
P+NP
Sbjct: 66 PLNP 69
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 41.1 bits (92), Expect = 4e-04
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
I+ DNG +K G S P +V I++A++ + K + V E +
Sbjct: 6 IIFDNGGHNMKIGTIDSESPR-----LVPNSIVKAKH-----EKKRVFVAHEQEECSDKF 55
Query: 307 EVSY--PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTE 435
+ Y P+E G V NW+ +W+ TFG M+V+ ++I LT+
Sbjct: 56 SLFYVRPIERGYVVNWDTQQQIWEKTFG--SMDVEASTSRIALTD 98
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 41.1 bits (92), Expect = 4e-04
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +1
Query: 127 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 306
I+ DNG +K G S P +V I++A++ + K + V E +
Sbjct: 6 IIFDNGGHNMKIGTIDSESPR-----LVPNSIVKAKH-----EKKRVFVAHEQEECSDKF 55
Query: 307 EVSY--PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTE 435
+ Y P+E G V NW+ +W+ TFG M+V+ ++I LT+
Sbjct: 56 SLFYVRPIERGYVVNWDTQQQIWEKTFG--SMDVEASTSRIALTD 98
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
protein C27B7.4 protein.
Length = 1274
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -2
Query: 447 IHWGFGEQNLRLFRIDVHLARTECVVPHVAHVLPITYDPILHRVANFKHGSQFGCFIAHH 268
++ G E++ +F I HL T + PH + YD + + +K FGC +AH
Sbjct: 235 VNAGHPEEDPDIFVIS-HL--THVLQPHQLGGIRFMYDNTIESLGEYKKSDGFGCILAHS 291
Query: 267 QVLNINISYFVF 232
L I F
Sbjct: 292 MGLGKTIQVITF 303
>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
protein C48E7.6 protein.
Length = 1764
Score = 30.7 bits (66), Expect = 0.53
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 305 SMDRSLDASSPTIKSLTSISPILFSARMIGLPTMEGNINAGKLLPAKPHFTKPVPLS-QT 129
S D ++S +++L S+ P++ A P INA LL + P F PL
Sbjct: 1473 SRDVLRNSSELRVRALVSVQPVIVEADT-ATPLTTSQINASTLLNSSPRFFLTSPLKFGR 1531
Query: 128 ITFRP 114
+TF P
Sbjct: 1532 LTFDP 1536
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical
protein C14C10.5 protein.
Length = 1908
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 419 FVSFGSTFILLGPNV*SHTWHMSSQLRTTPFSIG*LTSSMDRSLDASSPTIKSLTS--IS 246
++S S I + P + WH+ L + T++ +++L+ + LTS I+
Sbjct: 725 WISIASRMIKVHPKLLLDNWHLVETLMDLVMPLKKCTTATEKALNVLDNVLDQLTSIQIN 784
Query: 245 PILFSARMIGLPT 207
++ +M LPT
Sbjct: 785 SLVERRKMYDLPT 797
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 202 SMVGRPIIRAENKIGDIDVKDL-MVGDEASKLRSMLEVSYPMENGVVRNWEDM 357
++ + I+ + K I++ +L MVGDEA+ M+E + + +V N +D+
Sbjct: 646 ALTNKKIVNLKEK--KIEIHELEMVGDEANGYAIMMEAAQKLVKQIVTNTDDI 696
>U50072-2|AAQ01530.1| 367|Caenorhabditis elegans Hypothetical
protein K06B9.4 protein.
Length = 367
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 62 YNVICFLEHYTTPQ 21
YNVIC +E YT PQ
Sbjct: 28 YNVICHIEDYTPPQ 41
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 311 TSSMDRSLDASSPTIKSLTSISPILFSARMIGLPTMEGNINAGKLL 174
TSS +L A P + +L P F + +GLP + G +N +L+
Sbjct: 352 TSSAALTLGAPPPNLMALQQSLPPGFPNQQLGLPNLSG-LNQAQLM 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,165,991
Number of Sequences: 27780
Number of extensions: 234045
Number of successful extensions: 585
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -