Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h18
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 175 2e-44
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 172 9e-44
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 29 2.2
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 5.0
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152... 27 6.6
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 6.6
03_02_0480 + 8785130-8785192,8785472-8785518,8786415-8786508,878... 27 6.6
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 27 8.7
06_03_0395 - 20354713-20355570 27 8.7
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 175 bits (425), Expect = 2e-44
Identities = 81/132 (61%), Positives = 101/132 (76%), Gaps = 2/132 (1%)
Frame = +1
Query: 43 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 223 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 396
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 397 QEIPGLTDGNVP 432
++PGLTD P
Sbjct: 121 NDLPGLTDTEKP 132
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 172 bits (419), Expect = 9e-44
Identities = 80/132 (60%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
Frame = +1
Query: 43 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 223 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 396
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 397 QEIPGLTDGNVP 432
++PGLTD P
Sbjct: 121 NDLPGLTDTEKP 132
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -2
Query: 331 LIYVFSLHRGAVCNMSGPLTSEDEHGCLS-----RRPVSSGILACRCRQRHEVHSPSIHR 167
L+Y+F + G + + + E+E G S R +++G+ C HE + P +HR
Sbjct: 504 LVYIF-VRNGDLSSALHRKSGEEEEGLQSLDWIKRLKIATGVAEALCYLHHECNPPMVHR 562
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 79 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 168
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>12_01_0203 +
1520079-1520302,1522346-1522405,1522794-1523016,
1523038-1523434,1523522-1523781,1523866-1524011,
1524044-1524317,1524501-1525547
Length = 876
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 7 FHG*RSTGLTAVMKLNVSYPATGCQKLFEVVDEHKLR 117
FHG RSTG++++ N+ + A L + + HK R
Sbjct: 447 FHGERSTGVSSLAPGNIRHLALQVNSLEQCQELHKYR 483
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 132 LFVKDTKLVLVHHFEQLLASRCRVRNV*LHDCGQS 28
LF+ T V + F+ L RC V + LH C Q+
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110
>03_02_0480 +
8785130-8785192,8785472-8785518,8786415-8786508,
8786598-8786699,8786988-8787259,8787343-8787420,
8787648-8787894
Length = 300
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = -2
Query: 364 PRDWRQQYIHELIYVFSLHRGAVCNMSGPLTSEDEHGCL 248
PR W+ Y HRGA + E +HG +
Sbjct: 204 PRKWKTNKGQVFFYCLKRHRGASKKQGASMVEEVDHGTM 242
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 187 VLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 291
VLR+ GND ++ G + NS + ++ + H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335
>06_03_0395 - 20354713-20355570
Length = 285
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 262 EHGCLSRRPVSSGI-LACRCRQRHEVHSPSIHR 167
EH S P S L RC++RH +HS HR
Sbjct: 37 EHSATSPSPSSPRTRLFPRCQRRHRLHSHGRHR 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,496
Number of Sequences: 37544
Number of extensions: 288250
Number of successful extensions: 899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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