Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30h18
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   206   7e-54
AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   1.9  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   3.4  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    27   5.9  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  206 bits (502), Expect = 7e-54
 Identities = 94/130 (72%), Positives = 109/130 (83%)
 Frame = +1

Query: 43  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 223 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 402
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 403 IPGLTDGNVP 432
           I GLTD  +P
Sbjct: 121 IEGLTDSVLP 130


>AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical
           protein Y87G2A.6 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 157 QPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVSHEK 5
           +P+ + P   +KR E    PP         P  K  +  LRSIPS+  +EK
Sbjct: 2   EPVFKEPSPKKKRVE---NPPENAPDAPKKPQLKHESEFLRSIPSSSQYEK 49


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 61  YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 219
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 76  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 219
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 193 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 56
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 193 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 56
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 193 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 56
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 391 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,702,125
Number of Sequences: 27780
Number of extensions: 221888
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)