Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30h18
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.12 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.12 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 287 EWPFDIRRRTRLFVKTPCFI 228
           EWP  +R+R  LF+   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 287 EWPFDIRRRTRLFVKTPCFI 228
           EWP  +R+R  LF+   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 133 RMGAEVEADQLGDEWKGYV 189
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 368 WLLLLCARVPR 400
           WLL LC  VP+
Sbjct: 179 WLLALCLAVPQ 189


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 92  SNNFWHPVAGYETFN 48
           +NN ++P   Y TFN
Sbjct: 222 TNNLFYPYPPYGTFN 236


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 419 SVNPGISWAPLRTITRAKTERLASTIHPRTDLR 321
           S+N    W P R +   + +   ST+  R + R
Sbjct: 567 SINTVAEWEPPRALWPTEWKVRPSTVEEREEFR 599


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 30  IDRSHEVKRFVPGNGMP 80
           I+ +HE  +++PG+ +P
Sbjct: 55  INETHENVKYLPGHKLP 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,473
Number of Sequences: 438
Number of extensions: 2591
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)