Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h14
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.77
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 1.0
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 27 1.8
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 27 1.8
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 4.1
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 26 5.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.2
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 25 9.5
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 9.5
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.7 bits (61), Expect = 0.77
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Frame = +2
Query: 11 SHLIDLHCYIKTNITSQFGPLTCMRL-TGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSG 187
S +D+ I+ + S PLT + TG+ G N I Y Y ++T +
Sbjct: 1666 SSSMDMRFIIELLLGSDDSPLTLVGTGTGKSGKLVCNLYKTILKHYVHYGLSTSVPLYTS 1725
Query: 188 DD--SLVS----PPPPAHPDWDAVSPLLSLTFKKE 274
+ +L+S PPP H ++D + +++L F+KE
Sbjct: 1726 LEKHNLISRSPSSPPPIHTNFDTNADIITL-FEKE 1759
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 535 RPQNRRSARTSLSDNAFPRFLLVITPP 615
RPQ +RS+ LS +AF +F+ +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 580 HCLTKKFGH--FSYFEGEFLFLGTFTAKEIKKRAL 482
+ L GH S+ GE F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = +2
Query: 38 IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPP 217
I+ + + C + P T DD+ +Y EY +T V D L S P P
Sbjct: 403 IRVSSDKDYDSYACHEVVSNPSTLDDDYNYMFVCPPEEYTYSTDNVRTDSLD-LQSLPTP 461
Query: 218 AHPDWDAV 241
++V
Sbjct: 462 TLEQLESV 469
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 524 PWNIHGKRNQKARSGKSLD-LLARESRKGRRE 432
PW + K K R GK+++ LL R+ +G+ +
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKEK 317
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 126 TILPSFTASTTSPRKLSLSQVMIL*YHLHLLLTPIGTPFLHSFLLHSK 269
+IL S T P+ + ++ Y +HLLL + PF H + ++SK
Sbjct: 327 SILQEENWSNTLPQITGYDYMSLVSY-VHLLLKCLENPFDHHYAIYSK 373
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = -2
Query: 224 GEQEVEVILKNHHLRQRQFAW*-CRTRCK*RQYCNPCCRHKCRARR*GACRSKVQIDL*C 48
G++++ +LK H + C C C C++KC G C + I C
Sbjct: 452 GKEDISFLLKGHERKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRC 511
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 179 VSGDDSLVSPPPPAHPDWDAVSPLLSL 259
VS +S+VSPPP P A +P SL
Sbjct: 158 VSAPNSMVSPPPSFQPP-SAAAPATSL 183
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 500 FFCRECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLYALLDRTA 640
+FC +E + +K + +L T L+L + + L +LDRTA
Sbjct: 44 WFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILDRTA 90
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 176 RQFAW*CRTRCK*RQYCNPCCRHK 105
RQFA CR RC+ +YC+ C+H+
Sbjct: 493 RQFAK-CR-RCRRTKYCSKECQHQ 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,784
Number of Sequences: 5004
Number of extensions: 55322
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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