Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30h14
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1024 - 25449163-25449824,25451882-25452191                       29   2.4  
06_01_0087 + 695443-695655,696669-696983                               29   2.4  
09_06_0142 - 21107878-21109104                                         29   3.2  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    28   5.6  
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928...    28   7.5  
09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342...    27   9.9  
06_03_1503 - 30621089-30621170,30621258-30621438,30621462-306215...    27   9.9  
01_04_0078 + 15796336-15797130                                         27   9.9  
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574           27   9.9  

>12_02_1024 - 25449163-25449824,25451882-25452191
          Length = 323

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 101 GTYDDNTDYNIA---VIYSEYDITTQTVF--VSGDDSLVSPPPPAHP 226
           GT+D   D  +A   V    Y +  +T F   +G+D L  PPPPA P
Sbjct: 186 GTFDTALDAALAYDAVSRRLYGLNAKTNFPAAAGEDDLPPPPPPAKP 232


>06_01_0087 + 695443-695655,696669-696983
          Length = 175

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 188 DDSLVSPPPPAH---PDWDAVSPL 250
           DD L  PPPPA     DW+A +PL
Sbjct: 26  DDELPPPPPPASGSGEDWEATTPL 49


>09_06_0142 - 21107878-21109104
          Length = 408

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 38  IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 136
           I   +   FG L C+ + GEPG Y   T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 40  DVAMEVYKMRWNG 2
           D+AMEVYK+ WNG
Sbjct: 689 DIAMEVYKIVWNG 701


>10_08_0666 -
           19691985-19692216,19692327-19692404,19692508-19692837,
           19692913-19693158,19693224-19693483,19694469-19695023
          Length = 566

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 539 GRVFVPWNIHGKRNQKARSGKSL 471
           GR  VPW++HGK    +R+ +++
Sbjct: 253 GRCLVPWHLHGKHFPSSRTRRAV 275


>09_06_0245 -
           21833622-21833901,21833988-21834059,21834152-21834231,
           21834366-21835109,21835212-21835547
          Length = 503

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 203 SPPPPAHPDWDAV 241
           +PPPPAHPD  A+
Sbjct: 91  APPPPAHPDQPAI 103


>06_03_1503 -
           30621089-30621170,30621258-30621438,30621462-30621510,
           30621777-30621842,30621976-30622014,30622414-30622779,
           30623290-30623448,30623805-30623993,30624877-30625168,
           30626251-30626597,30627239-30627433,30627518-30627798,
           30629525-30629690
          Length = 803

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 166 RGDVVLAVNDGNIVIRVVVISAGLAGKAHAGQRSKLTCNVGFDVAMEVYKMRW 8
           +G V + + DG++   V+     +AG     + ++ T   GFD +  V + +W
Sbjct: 454 KGRVFVMLEDGHLAAAVLQDEGIMAGGRRCSESARRTVLGGFDASNYVTERKW 506


>01_04_0078 + 15796336-15797130
          Length = 264

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 126 TILPSFTASTTSPRKLSLSQVMIL*YHLHLLLTPIGTPFLHSFLLHSKKSFSETVSS 296
           TILPS   S+ +P          L +  + L TP+GT F  S   H   + S  V+S
Sbjct: 58  TILPSHNYSSYNPNTALAPPPFQLPHQQNFLTTPMGTYFDSSEQAHIMSTESPPVTS 114


>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
          Length = 212

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 179 VSGDDSLVSPPPPAH 223
           VS  D+LV+PPPP H
Sbjct: 156 VSAGDALVAPPPPPH 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,246,110
Number of Sequences: 37544
Number of extensions: 403922
Number of successful extensions: 1395
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)