Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h13
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 127 1e-30
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 31 0.12
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 30 0.16
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.27
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 0.83
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 0.83
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 0.83
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 1.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 1.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 1.5
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 27 1.5
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.5
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.9
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 1.9
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 1.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 3.4
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 3.4
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 4.5
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 4.5
SPBC30D10.12c |rsm27||mitochondrial ribosomal protein subunit S2... 25 4.5
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 25 5.9
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 25 5.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 5.9
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 25 5.9
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 5.9
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 5.9
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 7.8
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 25 7.8
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 127 bits (306), Expect = 1e-30
Identities = 62/116 (53%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Frame = +3
Query: 129 DGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVN 308
+G + + +E+L DE+ SRTRLL+N+IK+MKSE R++HE +KIKEN EKI N
Sbjct: 22 EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81
Query: 309 KTLPYLVSNVIELLDVDPQE-EEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIG 473
K LPYLV NV+E+LD+ P E + ++ A + ++ R GK AVIKTSTRQT FLP+IG
Sbjct: 82 KMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIG 137
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 30.7 bits (66), Expect = 0.12
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +3
Query: 141 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 320
ALS+ + +PT+ +LL ++M ++ +++ D + E +K +++ LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465
Query: 321 YLVSNVIELLD 353
L+ ++ LL+
Sbjct: 466 MLMERLVGLLE 476
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 30.3 bits (65), Expect = 0.16
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 204 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDG 383
DNE K MK E + + Q + ++ + ++K+K K ++ + EEEED
Sbjct: 89 DNEAKKMKREKEILRQQRQKRKSELTQLSQKVK-EKFKKMRKKPARRIVTIANDEEEEDD 147
Query: 384 AVVDLDS-QRKGKCAVIK 434
+D D+ +RK +K
Sbjct: 148 QTMDEDAFERKSMQGELK 165
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.5 bits (63), Expect = 0.27
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 108 EDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKEN 287
+DK+ E E +S + + E +++ + NE+K+ K + + ++ N KE+
Sbjct: 824 QDKNQIETLNERISAAADELSSMESINKNQA--NELKLAKQKCSNLQEKINFGNKLAKEH 881
Query: 288 TEKI 299
TEKI
Sbjct: 882 TEKI 885
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 0.83
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 120 IWEDGEEALSEEVLRMPTDEIVSRTRLLDN 209
++ DGE+ L E+ ++PT+ I S T DN
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 0.83
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 198 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 377
L+D +IM++E R + ++ + I + + N +LP+ I+L+D + E
Sbjct: 1114 LIDGHSEIMENERRRPKYRIRLSGNPILGDGKSDNQNMSLPFYRGEYIQLIDANQDNYLE 1173
Query: 378 D 380
+
Sbjct: 1174 E 1174
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 0.83
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 24 KCVWVQELPNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLL 203
KC+ +Q + ++Y + + DKS ++ E+ L + R+ ++ V +R+
Sbjct: 111 KCLRMQIVAQ-EEYVAPLIQKLEIIEKKLDKSFRKNMEDEL--RITRLASENNVLISRI- 166
Query: 204 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIK-VNKTL 317
+ K SE+ LQ QN+ K++ EKIK NK L
Sbjct: 167 -DRTKRHFSELFTQKQMLQLQNENFKDDYEKIKEENKRL 204
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 1.1
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +3
Query: 57 KDYYEKTNHNITMATT--LEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKS 230
++ E+ H++++ +ED++I +DGE A++E+ R + S T+ ++K K+
Sbjct: 134 EEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKR--EANVFSDTQSAP-QLKSGKA 190
Query: 231 EVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVV 392
+ N K N + +V V++ + +D PQE+ + +V
Sbjct: 191 LPADFENPYNLSNSKPVNNNNEDRVE-----AVTSENKSIDSAPQEKNHEYEIV 239
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 204 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL---DVDPQEEE 374
DN++ +++ +M + + N+K+ E + +KTL ++ S ++ L DV EE
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIVPNLPPADVGELNEE 759
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 216 KIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVI 341
+++ +E+ R+S L Q ++ +TEK ++N L SNV+
Sbjct: 1128 EMLNAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVL 1168
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.1 bits (57), Expect = 1.5
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +3
Query: 33 WVQELPNLKDYYEKTNHNITMATTLE---DKSIWEDGEEALSEEVLRMPTDEIVSRTRLL 203
+ + LP L+ YY K + + T E + W++G + +E++ D +V +
Sbjct: 109 FTESLPVLEKYY-KEDPLAPIRETCELAIARIQWKNGLDKNNEKITPSMYDSVVDPAPPM 167
Query: 204 DNEIKIMKSEVMRISHELQAQN 269
+ + +KSEV ++ E+ QN
Sbjct: 168 PDHEQDVKSEVAKLRSEIVDQN 189
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.1 bits (57), Expect = 1.5
Identities = 26/114 (22%), Positives = 47/114 (41%)
Frame = +3
Query: 102 TLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIK 281
T E E +L EEV R PTD+ + D + + K+E + I Q ++IK
Sbjct: 702 TAEKPFTTEKPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQ-----QTNEIK 756
Query: 282 ENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTST 443
+ LP SN E + + + ++ L+SQ + +++ +
Sbjct: 757 HVPTNTTSSVKLPQQPSNEDEKERITTADYADSTSLERLESQEPNRNELVQVGS 810
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 1.9
Identities = 23/131 (17%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Frame = +3
Query: 33 WVQELPNLKDYYEKTNHNI---TMATTLEDKSI-WEDGEEALSEEVLRMPTDEI----VS 188
+V+E L++ Y ++ ++ ++ ++ K++ E +E ++E + +I
Sbjct: 130 YVEESEKLQEIYHHSSESLRTRSIQMAVDQKNMEMELDDEDIAEPIQSWEHTQIKKGAFG 189
Query: 189 RTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQE 368
+ N + + ++ + ++Q + I +EK++ + + S + E L+++ QE
Sbjct: 190 ESPAFTNGLSVKLPNILTMDEQIQRLKEAIA--SEKLQQEERSQIIKSLMEEELEINEQE 247
Query: 369 EEEDGAVVDLD 401
E+ + +DLD
Sbjct: 248 EKIKHSFIDLD 258
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 1.9
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 168 PTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIEL 347
P+ EI S+ DNE ++ + + IS+E +ND +E E N+ S+
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE-AETSSGNEAADDEDSSSDAQ 119
Query: 348 LDVDPQEEEEDG-AVVDLDSQRK 413
V E DG + +LD +RK
Sbjct: 120 SSVPSFSEIHDGMSEEELDKERK 142
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 348 LDVDPQEEEEDGAVVDLDSQRKGKCAVIKTST 443
++VD +EEED V D D VI ST
Sbjct: 250 VEVDDDDEEEDEVVTDDDGTSNADSEVITAST 281
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/61 (18%), Positives = 29/61 (47%)
Frame = +3
Query: 198 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 377
L+D IM++ R + ++ + I + + N ++PY+ ++++D + E
Sbjct: 932 LIDGHCPIMENGKRRPKYRIRLSGNPILGDGKSDNQNMSIPYIRGEYVQMIDANQDNYLE 991
Query: 378 D 380
+
Sbjct: 992 E 992
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 90 TMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMR---ISHELQ 260
T+ L+D +IW D S R+ + R + ++ +++ + I + +Q
Sbjct: 300 TVGLMLQDNAIWSDYPRVWSAFCGRLNDKSVACRIKCIEVASNALQNSLATSEIIENVVQ 359
Query: 261 AQNDKIKENTEKIKV 305
K+ + EK++V
Sbjct: 360 MLQSKLADTDEKVRV 374
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 227 LHYFDFIVQKSGSTYDFISWHAK---NFLTESFLAILPN*LV 111
L + D ++K G+T FI WH N S +I+ N ++
Sbjct: 39 LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMII 80
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 129 DGEEALSEEVLRMPTDEI--VSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 302
D + L +L+ +DE+ ++ T L+DN ++ ++ +S + + I E++
Sbjct: 307 DSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMA 366
Query: 303 VNKTLPYL 326
++ PY+
Sbjct: 367 YDEENPYV 374
>SPBC30D10.12c |rsm27||mitochondrial ribosomal protein subunit
S27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 36 VQELPN--LKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEV 158
VQEL LK YY T + + T L DK+ + D +E L E+
Sbjct: 35 VQELKGAKLKSYYPATINYRQLRTLLNDKT-FPDSDEELRMEI 76
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 63 YYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSR 191
YY K N N ++D ++W DG E + E ++R
Sbjct: 199 YYHKNNRNPIDWKLVQDCAMWPDGYPGTGRESEKGSNLEAITR 241
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 5.9
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = +3
Query: 60 DYYE-KTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEV 236
DY K+ ++ AT +++ +WE ++ EE++ P E + L E K M +E
Sbjct: 40 DYQNIKSANDYDTATRWQNQFVWELARHSVGEEIVVYPKFE-----KYLGEEGKEM-AEK 93
Query: 237 MRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 377
R H+L + K + K + +P L ++E L EEE+
Sbjct: 94 DRHEHQL-VKEMLYKFQSMKANQSNFIPAL-DELMESLQKHIDEEEQ 138
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 21 VKCVWVQELPNLKDYYEKTNHNI 89
VK +WV L NL+DY +KT N+
Sbjct: 876 VKHLWV--LANLRDYVKKTKINL 896
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 105 LEDKSIWEDG---EEALSEEVLRMPTDEIVSRTRLLDNEIKI 221
+ DK WE+ +E + R+PTD+ +++ N +K+
Sbjct: 462 VHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNALKM 503
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 54 LKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 200
LKDY + T+ L D+ I DG++ E++ + EI +T L
Sbjct: 850 LKDYVDSFKPTNTVIKPLGDRDIMPDGQQLF--ELMATYSVEISEKTEL 896
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/82 (19%), Positives = 32/82 (39%)
Frame = +3
Query: 69 EKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRIS 248
E +H++ +DK + DG +E + S+ R++ N+ +V+
Sbjct: 68 EDISHSLPSIVHEDDKLVGSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPV 127
Query: 249 HELQAQNDKIKENTEKIKVNKT 314
ND + K V++T
Sbjct: 128 KTENFANDLDTTSDSKPVVHQT 149
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 240 RISHELQAQNDKIK-ENTEKIKVNKTLPYLVSNVIELLD--VDPQEEEEDGAV 389
R+S E A ++ + E+ + N+TL L N++E+ D DP ++ D ++
Sbjct: 579 RVSDEHSASSNFNEIESQASFEQNQTLDILSENIVEIQDKSTDPLQKSLDSSL 631
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 291 EKIKVNKTLPYLVSNVIELLDVDPQEEEED 380
+++ + TLPY V E+L + QEE+ D
Sbjct: 346 DRMLIISTLPYSHEEVKEILKIRCQEEDVD 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,240
Number of Sequences: 5004
Number of extensions: 27067
Number of successful extensions: 140
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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