Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30h13
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   0.31 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    25   0.31 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   0.31 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.95 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   0.95 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.9  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
 Frame = +3

Query: 135 EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 287
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 288 TEKIKVNKTLPYLVSNVIELLD 353
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
 Frame = +3

Query: 135 EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 287
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 288 TEKIKVNKTLPYLVSNVIELLD 353
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
 Frame = +3

Query: 135 EEALSEEVLRMPTDEIVSRTRLLDNEIKIMK---------SEVMRISHELQAQNDKIKEN 287
           +E+ + +   +  DEI+   RLL+N  K +          +E+ R+  +  A + K   +
Sbjct: 22  DESYTSKFDNINVDEILHSDRLLNNYFKCLMDEGRCTAEGNELKRVLPDALATDCKKCTD 81

Query: 288 TEKIKVNKTLPYLVSNVIELLD 353
            ++  + K + +LV N  EL D
Sbjct: 82  KQREVIKKVIKFLVENKPELWD 103


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 273 KIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDS 404
           +IK+  E ++ +     L + + + +  + +EEEE+   +DLDS
Sbjct: 291 EIKKEVEDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLDLDS 334


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 234 VMRISHELQAQNDKIKENTEKIKVNKTLPYLVSN 335
           + R + E+ AQND+  +    +K+ + LP+ V +
Sbjct: 334 LQRQNLEMVAQNDRTLQMIAGMKIKEELPHFVGS 367


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 45  LPNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPT 173
           L ++K    + N    M T L +  IWE  +    +E+  +PT
Sbjct: 218 LEDIKHINTRHNTKNGMKTLLSETDIWEVEQILAKKEIKGVPT 260


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 221 YFDFIVQKSGSTYDFISW 168
           Y D I + SG+T   I W
Sbjct: 371 YLDVIERNSGATDKIIRW 388


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 221 YFDFIVQKSGSTYDFISW 168
           Y D I + SG+T   I W
Sbjct: 371 YLDVIERNSGATDKIIRW 388


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 221 YFDFIVQKSGSTYDFISW 168
           Y D I + SG+T   I W
Sbjct: 371 YLDVIERNSGATDKIIRW 388


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 342 ELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTR 446
           EL D   Q+   DG +V    Q+KG   V   S R
Sbjct: 558 ELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSAR 592


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 342 ELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTR 446
           EL D   Q+   DG +V    Q+KG   V   S R
Sbjct: 558 ELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSAR 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,897
Number of Sequences: 438
Number of extensions: 1636
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)