Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h12
(256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 0.52
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 26 0.69
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 24 2.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 24 3.7
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 24 3.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 23 4.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 23 4.9
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 6.4
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 23 6.4
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 23 6.4
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 23 8.5
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 23 8.5
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 23 8.5
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 0.52
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 208 RAQFQDLCKNLLHCRIL 158
RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 0.69
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 58 HINVQQWSHIVKWDSFKCNTHSF 126
H++V WS I K+D++ S+
Sbjct: 74 HLSVDSWSSITKYDNYTVENESY 96
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 24.2 bits (50), Expect = 2.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 191 PLQKSITL*NFAFVSLCTYLYLKLCVLHLNESHLTMCDHCWTF 63
P QK L + L YLY L +L L+ L C W++
Sbjct: 122 PFQKIFALGYLRWYGLGVYLYSILILLFLSHCVLRCCLSNWSW 164
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 23.8 bits (49), Expect = 3.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 161 FAFVSLCTYLYLKLCVLHLNESHLTMC 81
F + CTY+ ++ V+ N SHL C
Sbjct: 106 FYLLECCTYILEQMQVVTKNTSHLYDC 132
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 23.8 bits (49), Expect = 3.7
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 106 KCNTHSFKYRYVHNDTNAKF---YNVIDFCK-GLEIAHDDILDC 225
KCN + +Y ++H NA + FC+ G + IL C
Sbjct: 271 KCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQHILQC 314
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 23.4 bits (48), Expect = 4.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -2
Query: 246 NLIAVPXAIKYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLETVRVA 109
NL + Y+ RNF+T ++ I+ C+ ++ +S + R+A
Sbjct: 499 NLSLTVQTVLYLKNRNFQTGNEVMSILGPCLSFLMKLSTHKNERIA 544
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 23.4 bits (48), Expect = 4.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 234 VPXAIKYVVVRNFKTFAKIYYI 169
+P Y V++NF ++YYI
Sbjct: 44 IPTFSPYAVIKNFDEVNRMYYI 65
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 1 NDAAIAAEDRFDPDDYKKYHINVQQWSHIVKW 96
ND +A + D +N + WSH KW
Sbjct: 75 NDTLLAEDQYLVTWDGPDDPLNPRNWSHSYKW 106
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 23.0 bits (47), Expect = 6.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -2
Query: 207 VRNFKTFAKIYYIVEFCVRVVVH 139
+ NF FA Y+ E C + H
Sbjct: 394 IENFSDFADEEYVFEICSTITSH 416
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 23.0 bits (47), Expect = 6.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 19 AEDRFDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTN 156
++D F DY+K I+ Q+S S K + + VH N
Sbjct: 138 SKDPFVSQDYEKESISSSQFSKKYSEGSLKSQQSNTRSNSVHEKQN 183
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 118 HSFKYRYVHNDTNAKFYNVID 180
HS +Y Y+ DT AK+ +ID
Sbjct: 323 HS-EYNYLAADTGAKYDQIID 342
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 22 EDRFDPDDYKKYHINVQQWSHI 87
+D+FDP + V QW HI
Sbjct: 231 KDQFDPYMLLFHAFKVPQWKHI 252
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 8 PPSPPKIGS 34
PPSPPK GS
Sbjct: 3 PPSPPKTGS 11
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 958,117
Number of Sequences: 5004
Number of extensions: 17245
Number of successful extensions: 53
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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