Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h12
(256 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 33 0.042
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 28 0.90
02_04_0043 + 19185969-19186036,19186205-19187342 27 1.6
02_04_0309 - 21924042-21925580 27 2.1
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 26 4.8
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 26 4.8
08_02_1624 - 28334067-28335851 26 4.8
07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672 26 4.8
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 26 4.8
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 25 6.4
01_04_0050 + 15427437-15427547,15427653-15427804,15427909-154281... 25 6.4
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575... 25 8.4
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 25 8.4
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 25 8.4
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572... 25 8.4
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 32.7 bits (71), Expect = 0.042
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 157 AKFYNVIDFCKGLE-IAHDDILDCXWD 234
A+FYNV C +E IAHD +LDC WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 28.3 bits (60), Expect = 0.90
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 85 IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCXWDSDQV 246
++ W +F+ + K R + D + K + +I+ + HDDI+ C + S ++
Sbjct: 2833 VMIWHAFRGKSADKKSRNANYDLSTKDHVIIESPYHILCGHDDIITCLFVSTEL 2886
>02_04_0043 + 19185969-19186036,19186205-19187342
Length = 401
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = -1
Query: 229 NXNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 110
N + CR D C LL CR L CR C C
Sbjct: 349 NGRRACRACGEADACVLLLPCRHLCLCRGCEAAADACPVC 388
>02_04_0309 - 21924042-21925580
Length = 512
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 240 IAVPXAIKYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLETVRVAFE*IPFNDVR 79
+A I+ VR+ + + E CVR VVH VL + +F + DVR
Sbjct: 149 LAALRGIRERKVRDIVGYIRTVAGEEMCVREVVHNGVLNLISTSFFSMDMADVR 202
>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
Length = 922
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -3
Query: 134 LYLKLCVLHLN---ESHLTMCDHCWTFMW 57
LYLK C+LHL+ E HL D C + W
Sbjct: 417 LYLKTCMLHLSIYPEDHLIEKD-CLIWKW 444
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 241 DRCPNXNQVCRRAQFQDLCKNLLHCRILRSCR-CARICT*NCACC 110
D+ N +CR +D+C LL CR C C+ C +C C
Sbjct: 342 DKLKNEQILCRICFERDICIVLLPCRHYVLCEACSDKCR-SCPIC 385
>08_02_1624 - 28334067-28335851
Length = 594
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 184 KNLLHCRILRSCRCARICT*NCAC 113
+ LL + R C CA +C C+C
Sbjct: 373 QQLLKRQTQRGCHCAELCGSRCSC 396
>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
Length = 641
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -3
Query: 152 VSLCTYLYLKLCVLHLNESHLTMCDHC 72
++ CT++Y + C++ + +S + C C
Sbjct: 407 ITSCTHIYCQTCIMKILKSSSSRCPIC 433
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1
Query: 34 DPDDYKKYHINVQQW--SHIVKWDSFK--CNTHSFKYRYVHNDT 153
DPDDY+K + Q+ +H + + C F R+ HN+T
Sbjct: 42 DPDDYEKLEEGIMQYGCAHYRRRCRIRAPCCNEIFDCRHCHNET 85
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 235 CPNXNQVCRRAQFQDLCKNLLHCRILRSC 149
CP + VCRR F + C +L + C
Sbjct: 1907 CPPFSAVCRRHDFLESCVDLYFSCVRSDC 1935
>01_04_0050 +
15427437-15427547,15427653-15427804,15427909-15428175,
15428181-15428214,15428282-15429386,15429482-15429612
Length = 599
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 181 FCKGLEIAHDDILDCXWDSDQVYHL 255
FC + I D + C W +D V H+
Sbjct: 173 FCLTISILQCDAMQCFWWNDDVEHV 197
>12_01_0673 -
5745956-5750346,5750788-5750872,5751018-5751082,
5751816-5751993
Length = 1572
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 16 AAEDRFDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDF 183
A D DPD +K++ + + QW ++ + + Y + AK Y V D+
Sbjct: 158 AVLDVVDPDRFKEHSVALDQWFWKLRDAVEEAEDAIDELEYYELEEEAKDYKVSDW 213
>07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = -2
Query: 252 MVNLIAVPXAIKYVVVRNFKTFAKIYYIVEFCVRVVVHV 136
++NL+ V I Y + ++++ ++ + F V+VH+
Sbjct: 994 IINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHL 1032
>03_06_0389 - 33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = -2
Query: 252 MVNLIAVPXAIKYVVVRNFKTFAKIYYIVEFCVRVVVHV 136
++NL+ V I Y + ++++ ++ + F V+VH+
Sbjct: 980 IINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHL 1018
>03_02_0120 -
5728572-5728712,5728812-5728916,5729178-5729441,
5729809-5729958,5730070-5730150,5730481-5730597,
5730679-5730831,5731426-5731569,5731773-5731802,
5732070-5732430,5732682-5732849,5733371-5733600,
5734088-5734194,5734275-5734623
Length = 799
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 40 DDYKKYHINVQQWSHI 87
D+Y KY ++Q WSH+
Sbjct: 249 DEYIKYEESLQAWSHL 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,406,413
Number of Sequences: 37544
Number of extensions: 115297
Number of successful extensions: 290
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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