Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h12
(256 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099003-1|AAC68742.1| 440|Caenorhabditis elegans Hypothetical ... 29 0.60
Z83105-8|CAB05488.1| 496|Caenorhabditis elegans Hypothetical pr... 28 0.80
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 27 1.4
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 27 1.8
U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical pr... 26 4.3
U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z68006-2|CAA91996.1| 560|Caenorhabditis elegans Hypothetical pr... 25 5.6
U80029-7|ABC71799.1| 201|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 25 7.4
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 25 7.4
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 25 7.4
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 25 7.4
U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein. 25 7.4
U00066-6|ABC71810.1| 189|Caenorhabditis elegans Small protein 4... 25 7.4
U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4... 25 7.4
AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical... 25 7.4
AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical... 25 7.4
AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative seri... 25 7.4
AF106587-1|AAC78226.1| 849|Caenorhabditis elegans Msh (muts hom... 25 7.4
AF000266-10|AAC71174.2| 124|Caenorhabditis elegans Hypothetical... 25 7.4
Z75554-6|CAA99958.1| 304|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical pr... 25 9.8
U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory recep... 25 9.8
U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant respons... 25 9.8
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec... 25 9.8
AC024800-6|AAF60726.1| 416|Caenorhabditis elegans Hypothetical ... 25 9.8
AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical ... 25 9.8
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph... 25 9.8
>AF099003-1|AAC68742.1| 440|Caenorhabditis elegans Hypothetical
protein Y59C2A.2 protein.
Length = 440
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +1
Query: 4 DAAIAAEDRFDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTNAKFYNVI 177
+ A+A +DP + +YH ++ +H ++ K +Y Y++ A Y V+
Sbjct: 231 EKALATMKHYDPVEELEYHDPLEAEAHAAYFEHVKGRPEPQEYEYLYRVEYAMLYGVL 288
>Z83105-8|CAB05488.1| 496|Caenorhabditis elegans Hypothetical
protein F14H3.8 protein.
Length = 496
Score = 28.3 bits (60), Expect = 0.80
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 19 AEDRFDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTNAKFYN 171
+ED + P+ ++ I ++ W + S N H FK Y+H N K ++
Sbjct: 130 SEDFYTPETEEEKIIQLETWKNAT---SACTNNHDFKEFYLHYKKNLKIFS 177
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 178 LLHCRILRSCRCARICT*NCA--CCI*MNPI*RCATIVGRLCGTFCS 44
+L + +S +C C +C C + PI +CAT + C CS
Sbjct: 491 ILEASVSQSAQCEPQCQQSCQQQCIQQLQPIQQCATACTQSCSQSCS 537
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 214 CRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 110
C R + C+ C R+C C R CT CC
Sbjct: 68 CCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCC 102
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 214 CRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 110
C R + C+ C R+C C R CT CC
Sbjct: 70 CCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCC 104
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 214 CRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 110
C R + C+ C R+C C R CT CC
Sbjct: 73 CCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCC 107
>U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical
protein C46H3.2b protein.
Length = 577
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +1
Query: 34 DPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDD 213
+PD KK ++ W I +W S N +S + ++H A++ + + + ++ D
Sbjct: 243 NPDHRKKLMSDIHSWKIIDQWPSVVPN-NSLR-EWLHAIALAEYIPMFESQRYTSVS--D 298
Query: 214 ILDCXWD 234
+LD W+
Sbjct: 299 VLDLQWE 305
>U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical
protein C46H3.2a protein.
Length = 713
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +1
Query: 34 DPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDD 213
+PD KK ++ W I +W S N +S + ++H A++ + + + ++ D
Sbjct: 379 NPDHRKKLMSDIHSWKIIDQWPSVVPN-NSLR-EWLHAIALAEYIPMFESQRYTSVS--D 434
Query: 214 ILDCXWD 234
+LD W+
Sbjct: 435 VLDLQWE 441
>Z68006-2|CAA91996.1| 560|Caenorhabditis elegans Hypothetical
protein K09C8.3 protein.
Length = 560
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 235 CPNXNQVCRRAQFQDLCKNLLHCRILRSCRCARIC 131
C + N C QDLC N H +RS C + C
Sbjct: 524 CDDKNVYCGAWALQDLCNNPNHNVWMRS-NCRKSC 557
>U80029-7|ABC71799.1| 201|Caenorhabditis elegans Hypothetical
protein T20D4.10 protein.
Length = 201
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 172 VIDFCKGLEIAHDDILDC 225
VI +CK ++ HDD C
Sbjct: 97 VIKYCKAMDYVHDDFAAC 114
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = -1
Query: 187 CKNLLHCRILRSCRCAR--ICT*NCACC 110
C+ C R C C R CT C CC
Sbjct: 89 CRPRCCCCCRRCCTCCRTCCCTRCCTCC 116
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 169 CRILRSCRCARICT*NCACC 110
C R+C C R CT CC
Sbjct: 101 CTCCRTCCCTRCCTCCRPCC 120
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 219 KYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLE 124
+YV V N +F K+Y+I +RV+ LE
Sbjct: 863 RYVQVFNINSFLKLYFIKACILRVLEIAEELE 894
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 219 KYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLE 124
+YV V N +F K+Y+I +RV+ LE
Sbjct: 868 RYVQVFNINSFLKLYFIKACILRVLEIAEELE 899
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 219 KYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLE 124
+YV V N +F K+Y+I +RV+ LE
Sbjct: 863 RYVQVFNINSFLKLYFIKACILRVLEIAEELE 894
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 219 KYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLE 124
+YV V N +F K+Y+I +RV+ LE
Sbjct: 868 RYVQVFNINSFLKLYFIKACILRVLEIAEELE 899
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = -1
Query: 187 CKNLLHCRILRSCRCAR--ICT*NCACC 110
C+ C R C C R CT C CC
Sbjct: 87 CRPRCCCCCRRCCTCCRTCCCTRCCTCC 114
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 169 CRILRSCRCARICT*NCACC 110
C R+C C R CT CC
Sbjct: 99 CTCCRTCCCTRCCTCCRPCC 118
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = -1
Query: 187 CKNLLHCRILRSCRCAR--ICT*NCACC 110
C+ C R C C R CT C CC
Sbjct: 88 CRPKCCCCCRRCCTCCRTCCCTRCCTCC 115
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 169 CRILRSCRCARICT*NCACC 110
C R+C C R CT CC
Sbjct: 100 CTCCRTCCCTRCCTCCRPCC 119
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = -1
Query: 187 CKNLLHCRILRSCRCAR--ICT*NCACC 110
C+ C R C C R CT C CC
Sbjct: 88 CRPRCCCCCRRCCTCCRTCCCTRCCTCC 115
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 169 CRILRSCRCARICT*NCACC 110
C R+C C R CT CC
Sbjct: 100 CTCCRTCCCTRCCTCCRPCC 119
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = -1
Query: 187 CKNLLHCRILRSCRCAR--ICT*NCACC 110
C+ C R C C R CT C CC
Sbjct: 89 CRPRCCCCCRRCCTCCRTCCCTRCCTCC 116
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 169 CRILRSCRCARICT*NCACC 110
C R+C C R CT CC
Sbjct: 101 CTCCRTCCCTRCCTCCRPCC 120
>U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein.
Length = 570
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 104 NESHLTMCDHCWTFMWYFL*SSGSNRSSAAMAAS 3
NES T+ D W +M S SN + A AA+
Sbjct: 460 NESSFTVFDIRWAYMQMLRRSRSSNEAVRAQAAA 493
>U00066-6|ABC71810.1| 189|Caenorhabditis elegans Small protein 4,
isoform b protein.
Length = 189
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 104 NESHLTMCDHCWTFMWYFL*SSGSNRSSAAMAAS 3
NES T+ D W +M S SN + A AA+
Sbjct: 79 NESSFTVFDIRWAYMQMLRRSRSSNEAVRAQAAA 112
>U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4,
isoform a protein.
Length = 565
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 104 NESHLTMCDHCWTFMWYFL*SSGSNRSSAAMAAS 3
NES T+ D W +M S SN + A AA+
Sbjct: 455 NESSFTVFDIRWAYMQMLRRSRSSNEAVRAQAAA 488
>AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 222 IKYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLETVR 115
IK + + N K+Y + E+C+ V + +E R
Sbjct: 245 IKLIEIFNIPAKGKVYMVFEYCIGSVQQLLDMEPAR 280
>AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 222 IKYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLETVR 115
IK + + N K+Y + E+C+ V + +E R
Sbjct: 245 IKLIEIFNIPAKGKVYMVFEYCIGSVQQLLDMEPAR 280
>AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative
serine-threonine kinasePAR-4 protein.
Length = 617
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 222 IKYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLETVR 115
IK + + N K+Y + E+C+ V + +E R
Sbjct: 245 IKLIEIFNIPAKGKVYMVFEYCIGSVQQLLDMEPAR 280
>AF106587-1|AAC78226.1| 849|Caenorhabditis elegans Msh (muts
homolog) family protein 2 protein.
Length = 849
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 130 YRYVHNDTNAKFYNVIDFCKGL 195
Y Y+ N YNV++ CK L
Sbjct: 288 YNYLEKSNNLTLYNVLNKCKTL 309
>AF000266-10|AAC71174.2| 124|Caenorhabditis elegans Hypothetical
protein W08F4.10 protein.
Length = 124
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +1
Query: 61 INVQQWSHIVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 201
++VQ +S + K N + ++ Y+ + I +C GLE+
Sbjct: 35 LDVQAYSSLTLDKLRKMNCETIQFEYLSEFSGTHLNEFIRYCDGLEV 81
>Z75554-6|CAA99958.1| 304|Caenorhabditis elegans Hypothetical
protein ZC455.7 protein.
Length = 304
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/36 (22%), Positives = 23/36 (63%)
Frame = -2
Query: 225 AIKYVVVRNFKTFAKIYYIVEFCVRVVVHVSVLETV 118
+++Y + N KTF + +++ ++V +++L+T+
Sbjct: 190 SVRYQLRENVKTFKMLNFLLLMLTGMIVLLAILKTI 225
>Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical
protein F11A10.3 protein.
Length = 522
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 143 CTYLYLKLCVLHLNESHLTMCDHCWTFM 60
C + + K C+L ES C C TF+
Sbjct: 318 CMHTFCKSCLLTYFESDNNTCPTCGTFI 345
>U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory receptor
Odr-10 protein.
Length = 339
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 198 FKTFAKIYYIVEFCVRVVVHV 136
F F+ Y I+EF +R ++H+
Sbjct: 49 FSVFSIFYAIIEFILRPIMHI 69
>U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant response
abnormal protein10 protein.
Length = 339
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 198 FKTFAKIYYIVEFCVRVVVHV 136
F F+ Y I+EF +R ++H+
Sbjct: 49 FSVFSIFYAIIEFILRPIMHI 69
>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
receptor TOL-1 protein.
Length = 1221
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -1
Query: 199 FQDLCKNLLHCRILRSCRCARICT*NCAC 113
++ +C+ C +C C +C NC C
Sbjct: 700 YKSVCEPECICCQYGNCDCKSVCPANCRC 728
>AC024800-6|AAF60726.1| 416|Caenorhabditis elegans Hypothetical
protein Y49F6A.5 protein.
Length = 416
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 37 PDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHN 147
P+DY +H+ Q W+ FK + F+ Y+ N
Sbjct: 216 PEDYPTFHVACQIWTGKYATGIFKNDVFDFR-NYLFN 251
>AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical
protein Y48G1A.1 protein.
Length = 901
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 31 FDPDDYKKYHINVQQWSHIVKWDSFKCNTH 120
++P+ KY +N+ Q S V W S + H
Sbjct: 631 YEPEYIVKYFLNLDQDSEDVTWRSIRHEFH 660
>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
(drosophila) family protein 1 protein.
Length = 1221
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -1
Query: 199 FQDLCKNLLHCRILRSCRCARICT*NCAC 113
++ +C+ C +C C +C NC C
Sbjct: 700 YKSVCEPECICCQYGNCDCKSVCPANCRC 728
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,534,136
Number of Sequences: 27780
Number of extensions: 107931
Number of successful extensions: 451
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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