Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h08
(226 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 26 0.77
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 1.0
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 24 2.4
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 2.4
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 24 2.4
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 24 3.1
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 23 4.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 23 4.1
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 23 4.1
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 23 5.4
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 23 5.4
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 23 7.2
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 23 7.2
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 23 7.2
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 22 9.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 22 9.5
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 22 9.5
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 22 9.5
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 109 PTPVRDWHNYHEQIIDNLIEYDNMYNF 189
PT D + + +++D+L YDNM F
Sbjct: 126 PTWTVDLFSRYTEVVDSLAPYDNMLGF 152
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.4 bits (53), Expect = 1.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 1 KYLSDKNVNFFKSITLVDDLPTNNYAY-DFYVKVKRCPTPVRDWHNYHEQIIDNLIEYD 174
+YLS++ FF + + ++ NN Y D + +R T R H + +I + L E D
Sbjct: 399 QYLSEQRPVFFNRLLALGNVENNNSIYDDIQKRTERISTIKR--HKKYFEIGERLTEKD 455
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.2 bits (50), Expect = 2.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 32 SSQSHLS---TICQLIITRTISTSKSNDAPPLCATG 130
SS +HLS T +TRT+S KSN L TG
Sbjct: 19 SSNTHLSREGTNRSSNVTRTVSGRKSNHGSSLTDTG 54
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 16 KNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPVRDWHNYHEQII 153
KN+ + +LPT+ + + + V+ P+ W Y Q I
Sbjct: 5 KNLKLILQSKKLSELPTHRKSINMTIPVRALRCPIWLWPTYDAQTI 50
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 40 ITLVDDLPTNNYAYDFYVKVKRCPTPVRDWHNYHEQIIDNLIEY 171
+T +D + + + + RC TPV+D+H Y + + N +EY
Sbjct: 199 VTAANDSKILEWDLNNFSRDTRCLTPVKDFH-YDDSPV-NDVEY 240
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 23.8 bits (49), Expect = 3.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +1
Query: 79 YDFYVKVKRCPTPVRDWHN 135
Y FY ++C + WHN
Sbjct: 188 YRFYTSKRKCFRSILSWHN 206
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 71 LLVGRSSTSVIDLKKFTFL 15
LL RSS S IDL++FT L
Sbjct: 92 LLQRRSSWSTIDLERFTKL 110
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 99 QTMPHPCARLAQLSRTDNRQLDRVRQ 176
+T P A+L QL + RQL V+Q
Sbjct: 244 ETFPPTAAQLQQLKQLHYRQLQSVQQ 269
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 121 RDWHNYHEQIIDNLIEYDN 177
R + N H++ NLI YDN
Sbjct: 608 RHYENEHDEYDPNLIYYDN 626
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 29 FSSQSHLSTICQLIITR 79
FSS+SH S C LI T+
Sbjct: 11 FSSKSHYSVSCFLIATQ 27
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 7 LSDKNVNFFKSITLVDDLPTNNYAYDFYVKVKR 105
L +F K+ + D+PTNN+ V++ R
Sbjct: 444 LPGAGTSFVKASLRLGDIPTNNFDQKLGVEIVR 476
>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 289
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 82 DFYVKVKRCPTPVRDWHN 135
D+ V V++ TP+ WH+
Sbjct: 16 DYQVYVEKNGTPISSWHD 33
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +1
Query: 1 KYLSDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPVRDWH 132
K S N N KS+ ++D + NN + ++ P WH
Sbjct: 29 KRKSKSNTNTAKSVAILDGVGVNN-TFGVISYREKFPMDYHIWH 71
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 68 IITRTISTSKSNDAP 112
I+T + T+K+N+AP
Sbjct: 702 IVTNVVETNKTNEAP 716
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 10 SDKNVNFFKSITLVDDLPTNNYAYDFYVKVK 102
+D +NF K ++ P Y+Y +Y ++K
Sbjct: 84 ADGPLNFSKHLSYKYQSPETVYSYSWYSRMK 114
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 108 ASFDFDVEIVRVIISW 61
ASF FDV ++ SW
Sbjct: 2920 ASFHFDVSVLEQYFSW 2935
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = +1
Query: 88 YVKVKRCPTPVRDWHNYHEQIIDNLI 165
++K PV DW Y +NL+
Sbjct: 734 FIKTGAVVAPVTDWRYYDAYYSENLL 759
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 47 LSTICQLIITRTISTSKSNDAPPLCATGTIITN 145
LS C+L +T IS +K+ +CA ++TN
Sbjct: 173 LSQTCRLALTGNISEAKAFIVEIMCA--GVVTN 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,112
Number of Sequences: 5004
Number of extensions: 11713
Number of successful extensions: 39
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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