Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30h08
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0811 - 19909128-19912214                                         28   0.88 
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    26   4.7  
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348...    25   6.2  
07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158     25   8.2  
07_01_0466 - 3518315-3521428                                           25   8.2  
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999...    25   8.2  
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354...    25   8.2  

>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 82  DFYVKVKRCPTPVRDWHNYHEQIIDNLIEYDN 177
           DFYV++ +C T +R   +  + + D L E  N
Sbjct: 713 DFYVQIAQCKTNIRRLEDEQDMMADKLTELAN 744


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 127 WHNYHEQIIDNLIE 168
           WHN+ EQI+ +LIE
Sbjct: 78  WHNFPEQIMKSLIE 91


>06_02_0345 +
           14833838-14833997,14834095-14834552,14834633-14834870,
           14834974-14835431,14836554-14836955
          Length = 571

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 73  YAYDFYVKVKRCPTPVRDWHNYHEQIIDNLIEYDNM 180
           Y  D YV    CP+P  D  +  E + D  +E DN+
Sbjct: 512 YYNDGYVSTP-CPSPPSDLFDCEENLEDGDVEDDNL 546


>07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158
          Length = 280

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 56  ICQLIITRTISTSKSNDAP 112
           I QL+  RTI  S+SND P
Sbjct: 135 IRQLVKVRTIGVSESNDCP 153


>07_01_0466 - 3518315-3521428
          Length = 1037

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 108 PHPCARLAQLSRTDNRQLD 164
           PHPC R +     D  +LD
Sbjct: 905 PHPCVRASMAEAADREELD 923


>06_03_0032 -
           15697530-15697669,15699215-15699437,15699823-15699929,
           15700047-15700224,15700393-15700455,15700474-15700602,
           15701211-15701430,15702162-15702262,15702954-15703062,
           15705169-15705290,15705473-15705515,15705848-15705903,
           15705983-15706089,15706167-15706342,15706507-15706618,
           15706711-15706759,15707184-15707276,15707452-15707571,
           15707686-15707787,15709442-15709540,15710103-15710237,
           15710421-15710499,15710747-15710822,15710904-15710993,
           15711139-15711217,15711304-15711338,15711457-15711531,
           15712628-15713375
          Length = 1221

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 94  KVKRCPTPVRDWHNYHEQIIDNLIEYDNMY 183
           K  R    + +WH  ++++ D +  YD +Y
Sbjct: 758 KADRLRNELLEWHEMYKKLTDEVKFYDGLY 787


>01_05_0799 +
           25334460-25334994,25335060-25335236,25335325-25335447,
           25335559-25335624,25335717-25336685,25336791-25336912,
           25337156-25337549,25337888-25338009,25338253-25338646,
           25338983-25339104,25339348-25339830,25340291-25340960,
           25341713-25342224,25342484-25342540
          Length = 1581

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 126 VAHRGGASFDFDVEIVRVII 67
           +AHR   S D D+ +VR+I+
Sbjct: 462 LAHRANRSPDLDINLVRIIL 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,748,879
Number of Sequences: 37544
Number of extensions: 68532
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)