Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h08
(226 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 29 0.34
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 27 1.4
U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine rec... 25 5.5
AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical ... 25 5.5
Z68012-2|CAA92020.1| 408|Caenorhabditis elegans Hypothetical pr... 25 7.2
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 25 7.2
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 25 7.2
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 25 7.2
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 25 7.2
Z93375-3|CAB07565.3| 443|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z83221-9|CAB05710.1| 400|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z82095-8|CAB05029.1| 400|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z35639-6|CAA84698.2| 322|Caenorhabditis elegans Hypothetical pr... 25 9.6
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 29.5 bits (63), Expect = 0.34
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 169 TLSSCRLSVRDNCASRAQGWG 107
T SSCRL +RD A GWG
Sbjct: 319 TGSSCRLKIRDGSVKGAGGWG 339
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical protein
ZK154.5 protein.
Length = 1105
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +1
Query: 64 TNNYAYDF----YVKVKRCPTPVRDWHNYHEQIIDNLIEYDNMYNF 189
T N+AY Y++ R PTP DW + +E N+++Y ++ +
Sbjct: 1019 TENHAYQDPLGRYLEGSRSPTP--DWEDDNESSSSNVVDYRSLAKY 1062
>U53139-11|AAK18936.2| 353|Caenorhabditis elegans Serpentine
receptor, class w protein71 protein.
Length = 353
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 138 IIVPVAHRGGASFDFDVEIVRVIISWQIVDKC 43
I +P++ A F F E+++ +S+Q DKC
Sbjct: 150 IFIPISFLVSALFYFGKELIKKQLSFQPGDKC 181
>AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical
protein Y25C1A.5 protein.
Length = 971
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 62 QLIITRTISTSKSNDAPPL 118
Q ++ T++TSK N+ PPL
Sbjct: 524 QTALSSTVTTSKKNEKPPL 542
>Z68012-2|CAA92020.1| 408|Caenorhabditis elegans Hypothetical
protein T24D5.2 protein.
Length = 408
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 7 LSDKNVNFFKSITLVDDLPTNNYA 78
++D+ +N F L DD+P N +A
Sbjct: 299 ITDQGINRFIKARLADDIPDNYFA 322
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 10 SDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPVRDWHNYHEQ 147
S+ N F ++ D N+Y+YD + PTP D+H+ Q
Sbjct: 373 SENNNPFHQNHHYNDISHPNHYSYDCGPNLYGFPTPYPDFHHPFNQ 418
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 10 SDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPVRDWHNYHEQ 147
S+ N F ++ D N+Y+YD + PTP D+H+ Q
Sbjct: 469 SENNNPFHQNHHYNDISHPNHYSYDCGPNLYGFPTPYPDFHHPFNQ 514
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 10 SDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPVRDWHNYHEQ 147
S+ N F ++ D N+Y+YD + PTP D+H+ Q
Sbjct: 441 SENNNPFHQNHHYNDISHPNHYSYDCGPNLYGFPTPYPDFHHPFNQ 486
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 10 SDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPVRDWHNYHEQ 147
S+ N F ++ D N+Y+YD + PTP D+H+ Q
Sbjct: 373 SENNNPFHQNHHYNDISHPNHYSYDCGPNLYGFPTPYPDFHHPFNQ 418
>Z93375-3|CAB07565.3| 443|Caenorhabditis elegans Hypothetical
protein C38C6.5 protein.
Length = 443
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 109 PTPVRDWHNYHEQIIDN 159
P RDW N H+ II+N
Sbjct: 54 PFKHRDWMNLHDSIINN 70
>Z83221-9|CAB05710.1| 400|Caenorhabditis elegans Hypothetical
protein C49A1.2 protein.
Length = 400
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 73 YAYDFYV--KVKRCPTPVRDWHNYHEQIIDNLIEYDNMY 183
+ + +YV V RC P+ W + ++ ++ L + +MY
Sbjct: 39 WLFPYYVVCAVYRCVLPIIGWDDQFKKFVEILSTHQDMY 77
>Z82095-8|CAB05029.1| 400|Caenorhabditis elegans Hypothetical
protein C49A1.2 protein.
Length = 400
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 73 YAYDFYV--KVKRCPTPVRDWHNYHEQIIDNLIEYDNMY 183
+ + +YV V RC P+ W + ++ ++ L + +MY
Sbjct: 39 WLFPYYVVCAVYRCVLPIIGWDDQFKKFVEILSTHQDMY 77
>Z35639-6|CAA84698.2| 322|Caenorhabditis elegans Hypothetical
protein D2045.7 protein.
Length = 322
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 1 KYLSDKNVNFFKSITLVD 54
+++S+K++N KSI +VD
Sbjct: 260 RHISEKSINLIKSILIVD 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,327,696
Number of Sequences: 27780
Number of extensions: 68469
Number of successful extensions: 282
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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