Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30h03
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    28   5.7  
Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81132-2|CAB03431.1|  125|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 67  VLRFQYLPSYSISVSNRYPRL 129
           +L F Y P+Y++SV++ Y RL
Sbjct: 151 ILMFAYFPAYTVSVASIYSRL 171


>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 227 FRNHFNLNFIGIKYP 183
           F NHF  N++G KYP
Sbjct: 504 FVNHFRKNYVGFKYP 518


>Z81132-2|CAB03431.1|  125|Caenorhabditis elegans Hypothetical
           protein T26E4.2 protein.
          Length = 125

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 82  YLPSYSISVSNRYPRLGRIG 141
           Y P+Y+ S+S++YP+ G  G
Sbjct: 55  YPPAYAYSISSKYPKAGGTG 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,396,262
Number of Sequences: 27780
Number of extensions: 246771
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)