Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30h03
(589 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 26 0.24
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 25 0.73
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 24 1.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 2.9
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 22 3.9
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 22 3.9
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 22 3.9
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 22 3.9
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 22 3.9
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 22 3.9
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 3.9
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 22 3.9
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 5.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 5.1
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 26.2 bits (55), Expect = 0.24
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 39 KCRHPAYDMSFKVSVP--T*LLYLCIKPVPQI 128
K HPAY+M+F + P T +++ +KP P I
Sbjct: 207 KRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWI 238
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 24.6 bits (51), Expect = 0.73
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFI 198
YNN Y N + + ++N+N+I
Sbjct: 97 YNNNYNNYNKKLYYNINYI 115
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 23.8 bits (49), Expect = 1.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 122 PDWGESGYFPNPTQIFNGFSEDT 190
PD+ Y TQ+FN F +DT
Sbjct: 34 PDYLPDRYRSVATQVFNRFGDDT 56
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.6 bits (46), Expect = 2.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFI 198
YNN Y N + ++N+N+I
Sbjct: 340 YNNNYNNNYKKLYYNINYI 358
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFIGIKYP 183
YN YK L + N N+ I + P
Sbjct: 101 YNTNYKKLQYYNIINIEQIPVPVP 124
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFIGIKYP 183
YN YK L + N N+ I + P
Sbjct: 101 YNTNYKKLQYYNIINIEQIPVPVP 124
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFIGIKYP 183
YN YK L + N N+ I + P
Sbjct: 101 YNTNYKKLQYYNIINIEQIPVPVP 124
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFIGIKYP 183
YN YK L + N N+ I + P
Sbjct: 101 YNTNYKKLQYYNIINIEQIPVPVP 124
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFIGIKYP 183
YN YK L + N N+ I + P
Sbjct: 101 YNTNYKKLQYYNIINIEQIPVPVP 124
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFIGIKYP 183
YN YK L + N N+ I + P
Sbjct: 101 YNTNYKKLQYYNIINIEQIPVPVP 124
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFIGIKYP 183
YN YK L + N N+ I + P
Sbjct: 105 YNTNYKKLQYYNIINIEQIPVPVP 128
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 254 YNNVYKNLSFRNHFNLNFIGIKYP 183
YN YK L + N N+ I + P
Sbjct: 101 YNTNYKKLQYYNIINIEQIPVPVP 124
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 5.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -2
Query: 165 ICVGFGKYPDSPQS 124
+C+G+G++P PQS
Sbjct: 338 LCIGYGRFP--PQS 349
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 5.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -2
Query: 165 ICVGFGKYPDSPQS 124
+C+G+G++P PQS
Sbjct: 306 LCIGYGRFP--PQS 317
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,169
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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