Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30h02
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       33   0.22 
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    33   0.22 
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    33   0.22 
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    33   0.22 
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    33   0.22 
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    33   0.22 
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    30   1.2  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    30   1.2  
Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 452  APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEN 580
            A  +    N +I KIDD T +L + +ADL +A    +   NE+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINES 4858


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 452  APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEN 580
            A  +    N +I KIDD T +L + +ADL +A    +   NE+
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINES 4218


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 452  APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEN 580
            A  +    N +I KIDD T +L + +ADL +A    +   NE+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINES 4858


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 452  APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEN 580
            A  +    N +I KIDD T +L + +ADL +A    +   NE+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINES 4858


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 452  APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEN 580
            A  +    N +I KIDD T +L + +ADL +A    +   NE+
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINES 4218


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 452  APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEN 580
            A  +    N +I KIDD T +L + +ADL +A    +   NE+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINES 4858


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 593 SSHNHFRWQTK*AIGWLPPNLRWPPSIF 510
           SSH+H R +TK  IGW P N R P   F
Sbjct: 721 SSHHHSR-ETKHRIGWSPSNYRNPRDCF 747


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 593  SSHNHFRWQTK*AIGWLPPNLRWPPSIF 510
            SSH+H R +TK  IGW P N R P   F
Sbjct: 943  SSHHHSR-ETKHRIGWSPSNYRNPRDCF 969


>Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical
           protein ZK593.1 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 336 MSTVCGCKYSGSPCFATLSGAWCWIWSACSNVDLY--LPSTWTRIARSQFTY 187
           +S +CG + S  P     +G  C I  ACS+V+    + +T   IAR  F++
Sbjct: 18  ISHLCGLRISERPQKTRKTGVICTIGPACSDVETLRKMINTGMNIARLNFSH 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,360
Number of Sequences: 27780
Number of extensions: 339787
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)