Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30g18
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 165 2e-42
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 161 6e-41
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.47
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 0.62
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 1.9
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 4.4
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 5.8
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 25 7.7
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.7
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 7.7
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 25 7.7
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 7.7
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 7.7
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 7.7
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.7
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 165 bits (402), Expect = 2e-42
Identities = 75/128 (58%), Positives = 100/128 (78%)
Frame = +1
Query: 85 IVDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 264
+VDPF+RKDWYD++AP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77
Query: 265 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 444
E SFRK +L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+
Sbjct: 78 EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137
Query: 445 FCIGFTNK 468
F IGFT++
Sbjct: 138 FVIGFTSR 145
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 161 bits (390), Expect = 6e-41
Identities = 73/128 (57%), Positives = 99/128 (77%)
Frame = +1
Query: 85 IVDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 264
+VDPF+RK+WYD++AP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77
Query: 265 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 444
E +FRK +L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RV
Sbjct: 78 EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137
Query: 445 FCIGFTNK 468
F IGFT +
Sbjct: 138 FVIGFTRR 145
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 0.47
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 220 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 393
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 394 IEANIDVKTT 423
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 0.62
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 163 TLVNRTQG-TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 339
T VN+ TK+A KG +V++ L+ DAE + + F I EY++ N
Sbjct: 82 TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137
Query: 340 MDLTTDKLRWMVKKWQTLIE 399
D T K + +W ++ E
Sbjct: 138 KDKTQGK---FINEWDSIFE 154
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 387 LPFFNHPPELIGCEVHAVEVAEHITS 310
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 441
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 366 PELIGCEVHAVEVAEHITSL 307
PELI C H EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 128 LRLCSARGKSAPRLSTVPRERKLLXK 205
L LC +R + P S PR+RK + K
Sbjct: 93 LNLCPSRFEVGPVYSANPRDRKTIRK 118
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 362 SLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETS 225
+LS++ S KLQ +R + +A+NL D+ A+ + +S S
Sbjct: 446 ALSLLLSQDEKLQHDVRSASSAALNLPRDTDIKATPNLSQSGNINS 491
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 24.6 bits (51), Expect = 7.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 228 FENSSLQSFXSNFRSLGTVDKRGADLPLAEHRRSPDIVPIFASEW---VDNLLLN 73
FE S+Q + DK L + SPD+ P + SEW D++LL+
Sbjct: 155 FERKSMQG---ELKERNLTDKTST-LSTSFGETSPDVNPFYLSEWPTVTDSILLS 205
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 173 TVPRERKLLXKD*REEFSK 229
T+P RKLL K+ + EFSK
Sbjct: 155 TLPVRRKLLEKNYKREFSK 173
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 210 QSFXSNFRSLGTVDKRGADLPLAEHRRSPDIVPIFASE 97
QSF + R VD R A L E P + +FAS+
Sbjct: 698 QSFGAEVRHQQNVDSRNALNKLIEGLSGPPLTILFASD 735
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 24.6 bits (51), Expect = 7.7
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = -1
Query: 372 HPPELIGCEVHAVEVAEHITSLHIFGD*--SEFAERPFRVSVSL*ISQGNFENSSLQSFX 199
+P +G E+ EH I D + + PF+ +V + NF+ +
Sbjct: 543 NPNHRLGAVADTTELKEHPFFADINWDLLSKKKVQPPFKPNVQNDLDVSNFDKEFTNTNV 602
Query: 198 SNFRSLGTVDKRGADLPLA 142
N + VD A PL+
Sbjct: 603 KNINIVSNVDPANASTPLS 621
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 204 FXSNFRSLGTVDKRGADLPLAEH 136
F + RSL +VD LPL EH
Sbjct: 44 FSRSHRSLSSVDVSSPSLPLREH 66
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 107 KIGTMSGLRLCSARGKSAPRLSTVPRERKLLXKD*R 214
K+G G ++ S S+PR ST+P+ + D R
Sbjct: 156 KMGYRGGYQMHSTPWASSPRNSTIPQRSQSFYNDTR 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,404
Number of Sequences: 5004
Number of extensions: 39349
Number of successful extensions: 108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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