Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30g18
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 196 1e-50
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 194 2e-50
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 194 4e-50
06_03_0290 - 19193707-19193752,19193822-19194090 28 3.3
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 4.4
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 4.4
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 7.6
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 7.6
04_01_0049 - 532308-532961 27 7.6
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 196 bits (477), Expect = 1e-50
Identities = 92/127 (72%), Positives = 109/127 (85%)
Frame = +1
Query: 88 VDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 267
VDPF +KDWYD++APS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 268 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 447
+++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 448 CIGFTNK 468
CIGFT +
Sbjct: 139 CIGFTKR 145
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 194 bits (474), Expect = 2e-50
Identities = 92/127 (72%), Positives = 109/127 (85%)
Frame = +1
Query: 88 VDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 267
VDPF++KDWYD++AP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 268 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 447
+++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 448 CIGFTNK 468
CIGFT +
Sbjct: 139 CIGFTKR 145
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 194 bits (472), Expect = 4e-50
Identities = 92/127 (72%), Positives = 108/127 (85%)
Frame = +1
Query: 88 VDPFTRKDWYDVRAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 267
VDPF +KDWYD++APS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 268 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 447
+++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 448 CIGFTNK 468
CIGFT +
Sbjct: 139 CIGFTKR 145
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 323 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 412
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 365 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 222
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 231 NFENSSLQSFXSNFRSLGTVDKRGADLPLAE 139
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 298 EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEAN 405
E +QG LCN +GM T+ LR + W T I N
Sbjct: 180 EKLQGEYQLCNGYGMKKATEVLR---EHWSTYILEN 212
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 160 TTLVNRTQGTKIASEGLKGRVFEV 231
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>04_01_0049 - 532308-532961
Length = 217
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 289 LIAEYVQGRNVLCNFHG-MDLTTDKLRWMVKKWQTLIEA 402
L+ E V GR VLC F G L D + W + + +L++A
Sbjct: 73 LLLEIVTGRRVLCKFQGTFQLLVDWV-WRLHREGSLLDA 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,664
Number of Sequences: 37544
Number of extensions: 266811
Number of successful extensions: 692
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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