Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g16
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152...    29   2.9  
11_01_0340 + 2534998-2535660                                           29   3.8  
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000     27   8.8  
02_03_0159 + 15822965-15823284,15823314-15823946,15824016-158241...    27   8.8  

>02_04_0532 +
           23711530-23711755,23712984-23713093,23713204-23715298,
           23716092-23716153,23716236-23716277,23716614-23716673,
           23716873-23717010,23717333-23717374,23717452-23717574
          Length = 965

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 396 WEIKQFLECAQQQHDLSLCDGFNEALRQ 479
           W +KQFL+C  Q+H  +L    + A+R+
Sbjct: 408 WILKQFLDCMYQKHPRALITDGDNAMRR 435


>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 92  KPSTSASKESCSPAK*C-TSSCGSIDPGY--DSSSTSAALAIRADGCHGW 232
           KP++S+S  S S       ++C   +PG    SSS+S     RAD C  W
Sbjct: 57  KPTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSCERW 106


>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
          Length = 461

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 340 LQLKPTTNTRDSRLKDHARGRSSNSWNVLNNST 438
           L+  P T   D  L DH R     +WN +   T
Sbjct: 26  LKKGPWTQAEDKLLVDHVRRHGEGNWNAVRRET 58


>02_03_0159 +
           15822965-15823284,15823314-15823946,15824016-15824161,
           15824354-15824875,15825169-15825275
          Length = 575

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 396 WEIKQFLECAQQQHDLSL-CDGFNEALR 476
           W +KQFL+C  Q+H   L  DG N   R
Sbjct: 279 WILKQFLDCMGQKHPRGLITDGDNSMRR 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,815,395
Number of Sequences: 37544
Number of extensions: 262050
Number of successful extensions: 724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)