Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g15
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    25   2.2  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    23   5.1  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    23   8.8  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    23   8.8  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    23   8.8  

>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  GLRDIDLILVQIXKFXIKVMVFYS*WICI 127
           GLR+ID+  +   +F I +      WIC+
Sbjct: 132 GLREIDIPYLDDKEFIIDISAGLRHWICV 160


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 97  DGVLFMMDLHLLHCI*ELNYIFNR*ITFTFRNLTIKC 207
           D VL  MD+ L+      + +FN     TFRNLT KC
Sbjct: 43  DVVLISMDVILMKPQVYRHLLFNSLSARTFRNLT-KC 78


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 260 FFF*HPECYIMLLNVY 213
           +FF HPE YI+++  +
Sbjct: 243 WFFGHPEVYILIMPAF 258


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = -1

Query: 170 YLLKI*LSS*MQCSKCRSIMNKTPSL*XKILXFELKLSQYRVNHNVSQRNQRVYNH 3
           YLL I L + +  SK ++I+NK+ S+  +IL     L++   +  +S   ++ YN+
Sbjct: 244 YLL-ILLENPLLNSKSKNIVNKSSSILKRILGVLSNLNEKTHHFFISCFKKQPYNN 298


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 254 F*HPECYIMLLNVYKRHFIVKLRNVNVI 171
           F  PE +I   N  + H    LRN+ +I
Sbjct: 192 FYEPEAFIKFENFVRNHSSNALRNIPII 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 823,470
Number of Sequences: 5004
Number of extensions: 11969
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)