Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g08
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyce...    31   0.19 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   7.2  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   7.2  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   7.2  
SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo...    25   9.5  

>SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 293 QTRATISTGSKEKKTTIKCYTFPKLPTKHSKATQGNTASTLSPH 162
           + R +ISTG K K+TT   Y  P   T        NTA +  P+
Sbjct: 39  RVRKSISTGYKSKQTTFPAYNPPLYNTVSENIALKNTAFSYEPN 82


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 225 QTTN*TLKGHTRKHSKHTFPA 163
           +T N   KGH+R+ S+H+ P+
Sbjct: 12  KTKNPYRKGHSRRQSRHSIPS 32


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 525 FDES*IKSLLTCFSYNPRD 469
           FD+S  KS+LTC  Y PRD
Sbjct: 201 FDKS-KKSILTCLHYFPRD 218


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -2

Query: 299 QNQTRATISTGSKEKKTTIKCYTFPKLPTKHSKATQGNTASTLSP 165
           Q +  +  S  S  +      Y +P  P+K +K     T   LSP
Sbjct: 63  QKEENSNTSKASSSEDEIAPKYLYPSSPSKSTKKPHNETEPLLSP 107


>SPAC19A8.09 |||ER to Golgi transport protein
           Yos1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 81

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 27  AAALATPSSK*TKKTRIKHLIRVKKTLKTHILTCLS 134
           +AAL     + T K+RI HLIR  +T+ T  L  ++
Sbjct: 35  SAALGFGDRQDTIKSRILHLIRAIRTVMTFPLIAIN 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,930
Number of Sequences: 5004
Number of extensions: 39254
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)