Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g08
         (654 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA...    30   2.4  
X51937-1|CAA36201.1|  984|Drosophila melanogaster protein ( Dros...    29   7.3  
X15469-2|CAA33497.1|  403|Drosophila melanogaster protein ( Dros...    29   7.3  

>AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA
            protein.
          Length = 1399

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
 Frame = -3

Query: 337  LLSSRNVDDCKTNKT-----KREQQLAPDQKKKKQL*NVTPFPNYQLNTQRPHKETQ--- 182
            +L + +V D   NK      +RE     D     Q    TP PN QL T+RPH   Q   
Sbjct: 1080 VLGTGSVKDAAPNKRHSQLYRREHLQNSDSNANSQ--QSTPQPNQQLPTERPHPLAQAHP 1137

Query: 181  --QAHFPRTAHCYSHVYA 134
                H  + +H +SH ++
Sbjct: 1138 HPHPHQHQRSHSHSHNFS 1155


>X51937-1|CAA36201.1|  984|Drosophila melanogaster protein (
           Drosophila melanogasterNOF-FB transposable element. ).
          Length = 984

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 343 IKLLSSRNVDDCKTNKTKREQQLAPDQKKKKQL*NVTPFPNYQLNTQRPHKETQ 182
           IK     + +D  T+   +E  L+   K+K +   +   PN +L   RPH+  Q
Sbjct: 646 IKPTEGNDAEDNDTDDENKEMDLSEQPKEKPRGKYLKKCPNVELLYNRPHRRKQ 699


>X15469-2|CAA33497.1|  403|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for complete foldback (FB)
           transposable n.  ).
          Length = 403

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 343 IKLLSSRNVDDCKTNKTKREQQLAPDQKKKKQL*NVTPFPNYQLNTQRPHKETQ 182
           IK     + +D  T+   +E  L+   K+K +   +   PN +L   RPH+  Q
Sbjct: 54  IKPTEGNDAEDNDTDDENKEMDLSEQPKEKPRGKYLKKCPNVELLYNRPHRRKQ 107


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,212,432
Number of Sequences: 53049
Number of extensions: 424605
Number of successful extensions: 1091
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)