Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g08
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    31   0.54 
AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    29   3.8  
AC024089-3|ABC48260.1|  123|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
            interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 229  FPNYQLNTQRPHKETQQAHFPRTAHCYSHVYALKQVRM*VFNVF 98
            F N++L ++   K T++  F R   C+SH++ L  V++ +F  F
Sbjct: 920  FQNFKLYSKEKRKFTRKTIFNRFFLCFSHIFGLFLVKIRIFYNF 963


>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 66  KTRIKHLIRVKKTLKTHILTCLSA*TCE*QCAVRGKCACC--VSLCG 200
           K R   ++R +  L+  IL CL+   C   C +   C CC  V  CG
Sbjct: 177 KCRKGIIMRKQDRLRKKILMCLAVCCCPLTCCLPLICICCNYVDACG 223


>AC024089-3|ABC48260.1|  123|Caenorhabditis elegans Hypothetical
           protein C36E6.8 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 136 HKRVNNSVQCGESVLAVFPCVAFECLVG-SLGKV*HFIVVF-FSFDPVLIVARVWFCSF 306
           ++R+ + ++   +V    PC    CLVG   G++  FI  F F    VLI   ++ C F
Sbjct: 61  YRRIQSIIENTTTVYVQKPCTVQGCLVGLGPGEIAPFITAFVFIICAVLIYILLFCCVF 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,119
Number of Sequences: 27780
Number of extensions: 230679
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)