Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g05
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   2.4  
05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216     27   5.6  
02_03_0215 + 16505994-16506542,16506803-16507894                       27   5.6  
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    27   7.4  
05_03_0553 - 15389376-15389499,15391167-15391576                       27   7.4  
05_03_0544 + 15239186-15239589,15242963-15243188                       27   7.4  
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521...    27   9.8  

>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 283 CFSVAEIKNYFMQPIDRLTIIPVLELDTCK 372
           CFS     N++M+PI+ LT++  +++DT +
Sbjct: 237 CFSTEGTANFYMRPIEGLTVL--VDMDTAE 264


>05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216
          Length = 137

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 20  EGDTRELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 160
           E D+ + D     Y +Y    PL L  Q+ +  N F+   + + A+P
Sbjct: 9   ECDSAQFDVLGQSYRQYQLQSPLLLQQQVFSPYNEFVIQQYGTAASP 55


>02_03_0215 + 16505994-16506542,16506803-16507894
          Length = 546

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 395 MHIEHN*CLHVSSSNTGIIVNLSIGCIK*FLISATEKQMLHC 270
           M   H   L VSS+N GI+ NLSI       +  T K +L C
Sbjct: 1   MEENHGFVLEVSSNNEGIVRNLSI-----INVGETNKNVLKC 37


>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +1

Query: 274 CNICFSVAEIKNYFMQPIDRLTIIPVLELDT-CKHQLCSMCXXXXXXXXXXPCPLCR 441
           C+  F  A++   +     RL+II    + T C H+ C  C           CP CR
Sbjct: 19  CSTYFREAQLDRVYYA---RLSIIQKARIITECLHRFCRDCIEKSMRLGNDECPACR 72


>05_03_0553 - 15389376-15389499,15391167-15391576
          Length = 177

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 59  YEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 160
           Y +Y    PL L  Q+++  N F+R  +   A+P
Sbjct: 28  YRQYQLQSPLLLQQQVLSPYNEFVRQQYGITASP 61


>05_03_0544 + 15239186-15239589,15242963-15243188
          Length = 209

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 35  ELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 160
           + D     Y +Y    P+ L  Q+++  N F+R  +   A+P
Sbjct: 20  QFDVLCQSYRQYQLQSPVLLQQQVLSPYNEFVRQQYGIAASP 61


>04_01_0399 -
           5214183-5214206,5215437-5215502,5219537-5219635,
           5219746-5219817,5219918-5220491,5220575-5220687,
           5220842-5220941,5221059-5221181,5221268-5221335,
           5221461-5221610,5221715-5221858,5222097-5222288,
           5222710-5222794,5222892-5223043,5223138-5223296,
           5223552-5223605,5223698-5223836,5223955-5224088,
           5224200-5225117
          Length = 1121

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +1

Query: 358 LDTCKHQLCSMCXXXXXXXXXX-PCPLCR 441
           L  C H++C  C           PCPLCR
Sbjct: 909 LTPCAHRMCRECLLSSWRTPSGGPCPLCR 937


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,097,417
Number of Sequences: 37544
Number of extensions: 160643
Number of successful extensions: 403
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)