Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g02
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   1.3  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.4  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   9.4  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 80  PDCCRDKLFFLFHS*ILGTCWLV 148
           P C +        S ILGTCW++
Sbjct: 39  PRCDKISAICFLLSTILGTCWII 61


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 339 GGGKQKITAAGQEYAHSCYFQGS 407
           G    K+T +   Y HS Y Q +
Sbjct: 236 GASASKVTLSVPFYGHSWYLQST 258


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -1

Query: 550  WTTCQTFITTPNRRDPMQSDKTSQRPTCARPKVFKT 443
            WTT  +   +     P  +  T++R T  RP    T
Sbjct: 1035 WTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTST 1070


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 268 PEKTSSPVCYCSALVVKTA 212
           PE++SS V   SALV+  A
Sbjct: 11  PEESSSEVTSSSALVMSPA 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,560
Number of Sequences: 336
Number of extensions: 2894
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)