Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g02
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0201 + 26687369-26689228                                         31   0.80 
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    30   1.4  
05_05_0057 + 21995018-21997006                                         29   2.4  
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    28   5.6  
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708...    27   7.5  
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    27   7.5  
01_06_1365 - 36690267-36692222                                         27   9.9  

>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 361 PPPAKSMPTPATFKVLM*LCKRGFCC 438
           PPP +  P P T++    +CK+GF C
Sbjct: 23  PPPPQPPPPPLTYRHHCKVCKKGFMC 48


>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 528 LPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRL 358
           LP    A   S+TK PR   D  A A R  + TA + PF  +H  +E   +G   GRRR 
Sbjct: 36  LPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRR 94

Query: 357 S 355
           S
Sbjct: 95  S 95


>05_05_0057 + 21995018-21997006
          Length = 662

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -2

Query: 480 RDQRAHARRCSKRTAAKPPFT*SHENLESSR------SGHTLGRRRLSFVYRRHISTRYN 319
           R   A  +RC+   +A+  F+ +   L SSR      +G+ + RRR      R+ S RY+
Sbjct: 555 RGCNARMQRCNSNASARSSFSSNSGGLGSSRRSYVDGNGNVVKRRREECALERNRSARYS 614

Query: 318 QRHQ*N 301
             H  N
Sbjct: 615 PGHADN 620


>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 335 LVQDIINAINRTGGSYYVQGRNAGENVESCLLLQRTCRQDRNL-AQSDVN 189
           LVQ +   +NR     Y   R+ G + +  +L +R C    NL A  D+N
Sbjct: 29  LVQSLKEIVNRPEAEIYAALRDCGMDPDEAILFKRQCGFKVNLRAWYDIN 78


>09_02_0302 -
           7086017-7086124,7086125-7086796,7087511-7088070,
           7088754-7089131,7089357-7089821,7090022-7090127,
           7090219-7090294,7090407-7090648,7090824-7090904,
           7091013-7091205,7091336-7091558,7091611-7091646,
           7091694-7091790
          Length = 1078

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 267 GVSTLHIITSAGSIDGVDYILY*CGGGKQKITAAGQEYAHSCYFQGSHVIM 419
           G   +HI  + G++  +D ++  C G +    A+GQ   H      SH ++
Sbjct: 693 GSLPIHIAAANGTLGIIDQLIKLCPGCESSCNASGQTILHIAVQTESHDVV 743


>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 133 AKDLTMKQKKQFVAAAIRPLTQIRLNT 53
           AK +  K KK F  AAI PLT + ++T
Sbjct: 279 AKYIAKKNKKLFWVAAIAPLTSVIIST 305


>01_06_1365 - 36690267-36692222
          Length = 651

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -2

Query: 459 RRCSKRTAAKPPFT*SHENLESSRSGH-----TLGRRRLSFVYRRHISTRYN 319
           +RC+   +A+  F+ +   L SSR  H     +  RRR   V  R+ S RY+
Sbjct: 540 QRCNSNLSARSSFSSNSGGLGSSRRSHVDVNGSSARRREEHVLERNRSARYS 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,948,571
Number of Sequences: 37544
Number of extensions: 339812
Number of successful extensions: 855
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)