Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30g02
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130633-1|AAI30634.1|  725|Homo sapiens USP54 protein protein.        30   4.6  
BC064967-1|AAH64967.1|  654|Homo sapiens USP54 protein protein.        30   4.6  
AL359074-7|CAO03506.1| 1684|Homo sapiens ubiquitin specific pept...    30   4.6  
AK127267-1|BAC86907.1|  767|Homo sapiens protein ( Homo sapiens ...    30   4.6  
AK127213-1|BAC86886.1|  725|Homo sapiens protein ( Homo sapiens ...    30   4.6  
AK127081-1|BAC86817.1|  716|Homo sapiens protein ( Homo sapiens ...    30   4.6  
AK126497-1|BAC86566.1|  772|Homo sapiens protein ( Homo sapiens ...    30   4.6  

>BC130633-1|AAI30634.1|  725|Homo sapiens USP54 protein protein.
          Length = 725

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = -3

Query: 281 QGRNAGENVESCLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKT 102
           +G+  G   ++    +   ++ R +AQ  +    +DP  AN SP++  +      +    
Sbjct: 84  EGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKDP--ANPSPVMPGIATSERGDEHSL 141

Query: 101 VCRGSNPAANPNSPQY 54
            C  SN +A P+ P Y
Sbjct: 142 GCSPSNSSAQPSLPLY 157


>BC064967-1|AAH64967.1|  654|Homo sapiens USP54 protein protein.
          Length = 654

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = -3

Query: 281 QGRNAGENVESCLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKT 102
           +G+  G   ++    +   ++ R +AQ  +    +DP  AN SP++  +      +    
Sbjct: 13  EGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKDP--ANPSPVMPGIATSERGDEHSL 70

Query: 101 VCRGSNPAANPNSPQY 54
            C  SN +A P+ P Y
Sbjct: 71  GCSPSNSSAQPSLPLY 86


>AL359074-7|CAO03506.1| 1684|Homo sapiens ubiquitin specific peptidase
            54 protein.
          Length = 1684

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = -3

Query: 281  QGRNAGENVESCLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKT 102
            +G+  G   ++    +   ++ R +AQ  +    +DP  AN SP++  +      +    
Sbjct: 996  EGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKDP--ANPSPVMPGIATSERGDEHSL 1053

Query: 101  VCRGSNPAANPNSPQY 54
             C  SN +A P+ P Y
Sbjct: 1054 GCSPSNSSAQPSLPLY 1069


>AK127267-1|BAC86907.1|  767|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45334 fis, clone BRHIP3007409. ).
          Length = 767

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = -3

Query: 281 QGRNAGENVESCLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKT 102
           +G+  G   ++    +   ++ R +AQ  +    +DP  AN SP++  +      +    
Sbjct: 84  EGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKDP--ANPSPVMPGIATSERGDEHSL 141

Query: 101 VCRGSNPAANPNSPQY 54
            C  SN +A P+ P Y
Sbjct: 142 GCSPSNSSAQPSLPLY 157


>AK127213-1|BAC86886.1|  725|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45280 fis, clone BRHIP3001360. ).
          Length = 725

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = -3

Query: 281 QGRNAGENVESCLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKT 102
           +G+  G   ++    +   ++ R +AQ  +    +DP  AN SP++  +      +    
Sbjct: 84  EGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKDP--ANPSPVMPGIATSERGDEHSL 141

Query: 101 VCRGSNPAANPNSPQY 54
            C  SN +A P+ P Y
Sbjct: 142 GCSPSNSSAQPSLPLY 157


>AK127081-1|BAC86817.1|  716|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45138 fis, clone BRAWH3039258. ).
          Length = 716

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = -3

Query: 281 QGRNAGENVESCLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKT 102
           +G+  G   ++    +   ++ R +AQ  +    +DP  AN SP++  +      +    
Sbjct: 84  EGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKDP--ANPSPVMPGIATSERGDEHSL 141

Query: 101 VCRGSNPAANPNSPQY 54
            C  SN +A P+ P Y
Sbjct: 142 GCSPSNSSAQPSLPLY 157


>AK126497-1|BAC86566.1|  772|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44533 fis, clone UTERU3004523. ).
          Length = 772

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = -3

Query: 281 QGRNAGENVESCLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKT 102
           +G+  G   ++    +   ++ R +AQ  +    +DP  AN SP++  +      +    
Sbjct: 84  EGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKDP--ANPSPVMPGIATSERGDEHSL 141

Query: 101 VCRGSNPAANPNSPQY 54
            C  SN +A P+ P Y
Sbjct: 142 GCSPSNSSAQPSLPLY 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,584,780
Number of Sequences: 237096
Number of extensions: 1790194
Number of successful extensions: 7700
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7698
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)