Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30g02
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 29 2.2
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 29 2.2
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 29 2.2
Z81495-5|CAB04059.1| 178|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 27 8.9
U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein. 27 8.9
U00066-6|ABC71810.1| 189|Caenorhabditis elegans Small protein 4... 27 8.9
U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4... 27 8.9
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 537 RLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 361
+LSLPH A+ + T R++ + S P + ++ +GH GR
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845
Query: 360 LSFVYRRH 337
+SFVY H
Sbjct: 846 VSFVYSHH 853
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 537 RLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 361
+LSLPH A+ + T R++ + S P + ++ +GH GR
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845
Query: 360 LSFVYRRH 337
+SFVY H
Sbjct: 846 VSFVYSHH 853
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 537 RLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 361
+LSLPH A+ + T R++ + S P + ++ +GH GR
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845
Query: 360 LSFVYRRH 337
+SFVY H
Sbjct: 846 VSFVYSHH 853
>Z81495-5|CAB04059.1| 178|Caenorhabditis elegans Hypothetical
protein F08G2.5 protein.
Length = 178
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -2
Query: 519 QTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESS 391
++ + S++ PR +RA +R SKR + KPP T S ++ + S
Sbjct: 59 RSSELPISESPAPRARRARKQR-SKRKSVKPPNTSSDDSSDDS 100
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 209 LAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNPAANPNSP 60
L Q ++ C DP ++P + ++ ++ C GSNPA P P
Sbjct: 1017 LVQGEIAQC--DPFNPPNAPCPSEFTCQWSLSNQRYQCCGSNPAPTPQRP 1064
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 125 FNYETEKTVCRGSNPAANPN 66
+N++T + + SNPAANPN
Sbjct: 1226 WNFKTVQEKTKSSNPAANPN 1245
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 530 HYHTKQTRSNAVRQNFPETNVRTPEGVQNALQQNPRLHNHMR 405
++H +Q V Q+FP +V+ Q QQN R H+ +
Sbjct: 1118 NHHVRQAVQEEVFQSFPRHDVQRHIHGQTNYQQNQRQHSQQQ 1159
>U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein.
Length = 570
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 181 QETPCWLTIRPY*PTCAKDLTMKQKKQF 98
+ETPCW+ + + P D +K QF
Sbjct: 540 KETPCWIEVTLHRPLQILDQLLKNSSQF 567
>U00066-6|ABC71810.1| 189|Caenorhabditis elegans Small protein 4,
isoform b protein.
Length = 189
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 181 QETPCWLTIRPY*PTCAKDLTMKQKKQF 98
+ETPCW+ + + P D +K QF
Sbjct: 159 KETPCWIEVTLHRPLQILDQLLKNSSQF 186
>U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4,
isoform a protein.
Length = 565
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 181 QETPCWLTIRPY*PTCAKDLTMKQKKQF 98
+ETPCW+ + + P D +K QF
Sbjct: 535 KETPCWIEVTLHRPLQILDQLLKNSSQF 562
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,086
Number of Sequences: 27780
Number of extensions: 280431
Number of successful extensions: 831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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