Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f23
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...   188   4e-49
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    73   4e-14
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    52   6e-08
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    42   5e-05
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    40   3e-04
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    36   0.003
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    29   0.62 
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    27   2.5  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.5  
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    26   4.4  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   7.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.7  

>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score =  188 bits (459), Expect = 4e-49
 Identities = 82/149 (55%), Positives = 116/149 (77%)
 Frame = +2

Query: 119 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 298
           MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG   Y+GL GLATD 
Sbjct: 1   MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60

Query: 299 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 478
           QT+++  ++++NLY+ +E R ++PKTF+ ++S+ LYE+RFGPYF  PV+AG+   DN P+
Sbjct: 61  QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119

Query: 479 VCNMDLIGCPNEPEDFVVSGTCSEQLYGM 565
           +C  D IGC +  EDF+VSGT +EQLYGM
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGM 148


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
 Frame = +2

Query: 137 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVFQ 313
           NGG  VA+ G     +A D R  +    ++T F P+V ++G  L +G  G   D   + +
Sbjct: 12  NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70

Query: 314 RLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMD 493
           R++ R++LY     R M  ++ + M+  LLY +RF PY++   +AG+D  + +  + + D
Sbjct: 71  RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDK-EGKGEIYSFD 129

Query: 494 LIG 502
            +G
Sbjct: 130 PVG 132


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
 Frame = +2

Query: 140 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 319
           G +V+A+K  D V IA D      +     +  ++ ++G    VG  G  +D Q + QRL
Sbjct: 43  GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101

Query: 320 KFRMNLYE--LKENRMMRPKTFSAMLSNLLYERR--FGPYFIEPVIAGLDPYDNQPYVCN 487
             ++ + E    +   ++P      LS +LY RR    PY+ + ++AG+D  + +PYV  
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161

Query: 488 MDLIG 502
            DL G
Sbjct: 162 ADLRG 166


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 23/92 (25%), Positives = 45/92 (48%)
 Frame = +2

Query: 140 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 319
           G  + A++ +D V +A D R  + A   +    K+ Q+   ++    G A DTQTV   L
Sbjct: 24  GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83

Query: 320 KFRMNLYELKENRMMRPKTFSAMLSNLLYERR 415
           K+ +++Y ++        T + + S + Y+ +
Sbjct: 84  KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK 115


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
 Frame = +2

Query: 140 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 319
           G   +A++G +C+ I  +++   + Q VS NF K+  +   + +   GL  D + +  + 
Sbjct: 30  GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88

Query: 320 KFRMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYVCN 487
           +     ++L     +  +  +  ++ +   Y +  G  P+ +  +IAG D  DN P V  
Sbjct: 89  RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148

Query: 488 MDLIGCPN 511
            +  G  N
Sbjct: 149 TEPAGIYN 156


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = +2

Query: 137 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 316
           +G   +A + Q  + +  D R        S    KV ++ P L   L G A D Q     
Sbjct: 60  HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119

Query: 317 LKFRMNLYELKENRMMRPKTFSAMLSNLLY 406
           L     L++L+   ++     S +LSN+ Y
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITY 149


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 143 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 292
           GA+     +D  VA A D   G+     S +  +VF++G  L VG+ G  T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 169 RLCGHRYGQAVWYTSSNSINQLPKSIPNGTHVV 267
           RL G  Y   V Y+S NS+  LPK  P+  HVV
Sbjct: 239 RLRGKTYDYKVEYSSINSLFLLPK--PDEQHVV 269


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 47  IQYFELITLQ*FQVKKCLSFYITNMSIL----AYNGGAVVAMK 163
           ++YF+ + +   +VK   SF+I N  +L    AYNG   V +K
Sbjct: 441 LKYFDQVVVGLKEVKDAFSFFIFNRFVLVYVPAYNGVDPVTLK 483


>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 217 NSINQLPKSIPNGTHVVCRPSRS 285
           +S+  LP  +P+G  + C P RS
Sbjct: 84  HSLKDLPSEMPDGMVIACIPKRS 106


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = +2

Query: 194 KRFGIQAQTVSTNFPKVFQ 250
           +RFG+++ T++++F KVF+
Sbjct: 281 ERFGLKSTTIASSFGKVFR 299


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = -2

Query: 330 ILNFSL*NTVWVSVARPGRPTYNVGPIWNTFGKLVDTV*ACIPNR------LSVAMATQS 169
           ++NFS   T + S      P+ N  P W+    +     + +PN        +V  A   
Sbjct: 449 VVNFSTPITNFFSKIYKDNPSLNP-PSWHLITLVHRNEKSSLPNLELYIDGSAVERAACP 507

Query: 168 WPFMATTAPPLYASI 124
           +PF+++T  PLY S+
Sbjct: 508 YPFLSSTLQPLYVSL 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,799
Number of Sequences: 5004
Number of extensions: 51930
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)