Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30f23
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 167 4e-42
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 48 5e-06
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 48 5e-06
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 38 0.005
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 34 0.081
U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF016451-1|AAB66002.2| 294|Caenorhabditis elegans Serpentine re... 28 4.0
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 27 7.0
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 27 7.0
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 27 9.3
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 27 9.3
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 167 bits (407), Expect = 4e-42
Identities = 77/149 (51%), Positives = 104/149 (69%)
Frame = +2
Query: 119 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 298
MSI++Y GG VVAM G +CV IA+D R G Q T++T+ KV ++ +YVGL G +D
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 299 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 478
+TV +++ FR NLYEL+ENR ++P+ S M+SNL Y+ RFG YF EP++AGLD N+PY
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119
Query: 479 VCNMDLIGCPNEPEDFVVSGTCSEQLYGM 565
+C MD IGC + P DFV GT E L G+
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGV 148
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 48.0 bits (109), Expect = 5e-06
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +2
Query: 140 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 316
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 317 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 496
L+ R++ Y M + +LS LY RRF PY+ ++AG+D + + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169
Query: 497 IGC 505
IGC
Sbjct: 170 IGC 172
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 48.0 bits (109), Expect = 5e-06
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +2
Query: 140 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 316
GG+ A+ G++ +A+D R + T + Q + + + G D + +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 317 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVCNMDL 496
L+ R++ Y M + +LS LY RRF PY+ ++AG+D + + V + D
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH-GKGAVFSYDP 169
Query: 497 IGC 505
IGC
Sbjct: 170 IGC 172
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = +2
Query: 140 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 319
G ++AM+ V + TD R + S K+ + + V G A DTQ +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 320 KFRMNLYELKENRMMRPKTFSAMLSNLLYERR 415
K+ +++Y + EN+ + S + LY R
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR 114
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 35.5 bits (78), Expect = 0.027
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Frame = +2
Query: 140 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 319
G V ++G+DC+ I +K+ I A K+ + + + GL+ D + + R
Sbjct: 30 GSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88
Query: 320 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRF------GPYFIEPVIAGLDPYDNQP 475
+ Y+L + S ++N ++RF P+ I +I G D +D P
Sbjct: 89 RIECQSYKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISMLIGGFD-HDGTP 143
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 33.9 bits (74), Expect = 0.081
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = +2
Query: 176 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 355
+ +A D R S + K+ +G + + G A D Q + + LYEL+E
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 356 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD 457
+ S +N LY R + ++AG D
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD 176
>U64855-3|AAB04982.1| 447|Caenorhabditis elegans Hypothetical
protein ZK742.3 protein.
Length = 447
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 155 AMKGQDCVAIATDKRFGIQAQTVSTN 232
AMK +AIA G+QAQT TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138
>AF016451-1|AAB66002.2| 294|Caenorhabditis elegans Serpentine
receptor, class x protein38 protein.
Length = 294
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 56 FELITLQ*FQVKKCLSFYITNMSILAYNGGAVVAMKG 166
F LITL FQ+ C ++Y Y+GGA+ ++ G
Sbjct: 132 FILITLF-FQILGCQNYYNAEYRAFQYSGGAICSLYG 167
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 185 ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 313
A + FG AQ V P F + T PGL T ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 185 ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 313
A + FG AQ V P F + T PGL T ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 185 ATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQ 313
A + FG AQ V P F + T PGL T ++FQ
Sbjct: 1174 APHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPGLTTPMASIFQ 1216
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 285 RPGRPTYNVGPIWNTFGKLVDTV*ACI 205
+P P++N GP+ KL+D + CI
Sbjct: 237 KPPGPSFNSGPLAGIMSKLLDKIIPCI 263
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 285 RPGRPTYNVGPIWNTFGKLVDTV*ACI 205
+P P++N GP+ KL+D + CI
Sbjct: 237 KPPGPSFNSGPLAGIMSKLLDKIIPCI 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,417
Number of Sequences: 27780
Number of extensions: 286634
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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