Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f22
         (458 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P17500 Cluster: Major capsid protein; n=15; Nucleopolyh...   150   1e-35
UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata nucleopolyh...   110   2e-23
UniRef50_P35840 Cluster: Major capsid protein; n=12; Nucleopolyh...   103   2e-21
UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata ...   100   1e-20
UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxoph...    98   7e-20
UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP...    77   2e-13
UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostel...    64   1e-09
UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum granulovir...    64   1e-09
UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep: Vp3...    58   1e-07
UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -...    56   4e-07
UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea o...    55   8e-07
UniRef50_Q8YXH3 Cluster: Zam protein; n=6; Cyanobacteria|Rep: Za...    32   5.2  
UniRef50_A4F1M3 Cluster: Cytochrome P450-like protein; n=1; Rose...    32   6.8  
UniRef50_Q031F3 Cluster: Putative uncharacterized protein; n=1; ...    31   9.0  

>UniRef50_P17500 Cluster: Major capsid protein; n=15;
           Nucleopolyhedrovirus|Rep: Major capsid protein - Orgyia
           pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
          Length = 351

 Score =  150 bits (364), Expect = 1e-35
 Identities = 67/101 (66%), Positives = 82/101 (81%)
 Frame = +3

Query: 60  MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
           MAL+  G++ R+   N CIF +I  FD+C+TY+SPCS DA  DDGWFIC+ HL  RFKMS
Sbjct: 1   MALVSPGVSSRRS-TNHCIFGAIEPFDSCVTYRSPCSSDASVDDGWFICDYHLKLRFKMS 59

Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNY 362
           KMVLPI+DEDDNQ+K TIARHLVG+KERG+KRIL+P+  NY
Sbjct: 60  KMVLPIYDEDDNQYKRTIARHLVGHKERGVKRILVPTRANY 100


>UniRef50_Q0N423 Cluster: VP39; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: VP39 - Clanis bilineata
           nucleopolyhedrosis virus
          Length = 350

 Score =  110 bits (264), Expect = 2e-23
 Identities = 54/101 (53%), Positives = 67/101 (66%)
 Frame = +3

Query: 60  MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
           MAL+  GMA  ++  N CIF S+  FDAC  Y+SPCS DA ++DGW IC+ HL  RFKM 
Sbjct: 1   MALVVSGMATGRIN-NYCIFGSVQPFDACGPYRSPCSDDAKNNDGWLICDYHLSTRFKME 59

Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNY 362
           KMVLPI D D      T+AR LV +K  G +RIL+P+  NY
Sbjct: 60  KMVLPIPDADGTALNRTLARSLVNHKAIGDERILVPTKRNY 100


>UniRef50_P35840 Cluster: Major capsid protein; n=12;
           Nucleopolyhedrovirus|Rep: Major capsid protein -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 356

 Score =  103 bits (246), Expect = 2e-21
 Identities = 46/102 (45%), Positives = 67/102 (65%)
 Frame = +3

Query: 60  MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
           MAL+   ++  ++R N C+F ++  FD C  Y SPCSPD+ ++DGWFIC+ H   RFK+ 
Sbjct: 1   MALVSGALSTNRLR-NYCVFGAVQPFDNCRAYGSPCSPDSTNNDGWFICDYHSSIRFKIE 59

Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQ 365
           KMVLPI D + N +  T+ + LV +K  G  R+LIP+  NY+
Sbjct: 60  KMVLPIPDAEGNIYNRTVGKSLVNHKTLGAARVLIPTRDNYK 101


>UniRef50_Q8QLD5 Cluster: Vp39 capsid; n=1; Mamestra configurata
           NPV-A|Rep: Vp39 capsid - Mamestra configurata NPV-A
          Length = 325

 Score =  100 bits (240), Expect = 1e-20
 Identities = 49/102 (48%), Positives = 62/102 (60%)
 Frame = +3

Query: 60  MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
           MAL P G    Q + N CIF +I  FD C TY SPCS DA  +DGWFIC  HL  RF+M 
Sbjct: 1   MALTPYGS--NQPQSNNCIFGAIRPFDTCRTYSSPCSNDASQEDGWFICEYHLSIRFRME 58

Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQ 365
           KMVLPI D +   +  ++ + L+   E    R+LIP+ TNY+
Sbjct: 59  KMVLPIPDAEGTIYNRSVGKSLISGTES--NRVLIPTKTNYE 98


>UniRef50_Q80LM9 Cluster: Major capsid protein VP39; n=1; Adoxophyes
           honmai NPV|Rep: Major capsid protein VP39 - Adoxophyes
           honmai nucleopolyhedrovirus
          Length = 312

 Score = 98.3 bits (234), Expect = 7e-20
 Identities = 47/102 (46%), Positives = 60/102 (58%)
 Frame = +3

Query: 60  MALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMS 239
           MAL+P G+   +   N CIFA + SFDAC  Y + CS DA  +DGW+IC  H    FKM 
Sbjct: 1   MALVPAGLTSSRSNSN-CIFAGVQSFDACYRYPNECSKDADSNDGWYICEYHASVHFKME 59

Query: 240 KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQ 365
           KM L I D D+     T+ R LV + E G  RIL+P+  NY+
Sbjct: 60  KMSLAIPDADNKVLFRTVGRSLVKHTEEGTARILVPNKNNYE 101


>UniRef50_Q9DWZ8 Cluster: VP39; n=2; Nucleopolyhedrovirus|Rep: VP39
           - Spodoptera litura multicapsid nucleopolyhedrovirus
           (SpltMNPV)
          Length = 302

 Score = 77.0 bits (181), Expect = 2e-13
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
 Frame = +3

Query: 60  MALMPVGMAPRQMRVNRCIFASI--VSFDACITYKSPCSPDAYHDDGWFICNSHLIKRFK 233
           MAL+  G A  +M+ N CIF  +  + F+ C  Y+SPCS DA  +DG F+C  HL + FK
Sbjct: 1   MALVSGGNANSRMK-NYCIFQGVRPIEFNQCSNYRSPCSDDASQNDGVFMCQYHLSRFFK 59

Query: 234 MSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQ 365
           + K  + I D    +    + + LV +  R   RILIP+  NYQ
Sbjct: 60  IEKTSIAIPDGTGQKLYRIVGKSLVSHNARANDRILIPTQENYQ 103


>UniRef50_Q9DVV4 Cluster: PxORF79 peptide; n=1; Plutella xylostella
           granulovirus|Rep: PxORF79 peptide - Plutella xylostella
           granulovirus
          Length = 320

 Score = 64.1 bits (149), Expect = 1e-09
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
 Frame = +3

Query: 81  MAPRQMRV-NRCIFASIVSFDA--CITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVL 251
           M+ RQ RV N CIF ++   ++  C      CS DA +DDG FICN HL   F + KM L
Sbjct: 2   MSLRQNRVYNNCIFQAVSYSNSSLCADPVLHCSKDASNDDGTFICNHHLSMYFPLEKMTL 61

Query: 252 PIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNY 362
            I       FK+ I + LV  ++   + I+IPS  NY
Sbjct: 62  EIPSGTGTSFKLLIGKSLV--QQDATRNIIIPSKANY 96


>UniRef50_Q6QXM6 Cluster: ORF086; n=1; Agrotis segetum
           granulovirus|Rep: ORF086 - Agrotis segetum granulosis
           virus (AsGV) (Agrotis segetumgranulovirus)
          Length = 292

 Score = 64.1 bits (149), Expect = 1e-09
 Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +3

Query: 105 NRCIFASIV--SFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQ 278
           N CIF  +    F  C  Y+ PC    Y+DDG FIC  HL K FKM KMV+ I      +
Sbjct: 12  NLCIFQGVQPPEFLNCRPYEPPCI-QPYNDDGTFICQYHLAKYFKMEKMVVRIGSGVGPE 70

Query: 279 FKMTIARHLVGNKERGIKRILIPSATNY 362
           F M I + L+       +RI+IP  +N+
Sbjct: 71  FDMLIGKTLIQQNTEDARRIMIPLPSNF 98


>UniRef50_Q7T9T4 Cluster: Vp39-capsid; n=5; Granulovirus|Rep:
           Vp39-capsid - Adoxophyes orana granulovirus (AoGV)
          Length = 291

 Score = 57.6 bits (133), Expect = 1e-07
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
 Frame = +3

Query: 75  VGMAPRQMRVNRCIFASIVS----FDACITYKSPCSPDAYHD--DGWFICNSHLIKRFKM 236
           + + P ++  N CIF  +V     +  C  Y SPCSPDA +   DG FICN HL K FK+
Sbjct: 4   INVGPCELN-NYCIFQGVVGMMPDYYRCENYSSPCSPDASNSNLDGTFICNYHLNKYFKI 62

Query: 237 SKMVLPIFDEDDNQ-FKMTIARHLV--GNKERGIKRILIP 347
            K    I    DN+ FKM + + L+   + +    ++LIP
Sbjct: 63  LKSSFRIPSGKDNKSFKMLVGQSLLQQTDNDTNKNKVLIP 102


>UniRef50_Q9PYT2 Cluster: ORF111; n=4; Granulovirus|Rep: ORF111 -
           Xestia c-nigrum granulosis virus (XnGV) (Xestia
           c-nigrumgranulovirus)
          Length = 329

 Score = 56.0 bits (129), Expect = 4e-07
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +3

Query: 105 NRCIFASIV--SFDACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDN- 275
           N CIF  +    F  C  Y  PCS D  + DG F+C+ HL + FK+ K V  I    +N 
Sbjct: 16  NLCIFQGVQPPEFMNCGIYTPPCSDDCVNKDGTFVCSYHLARYFKLKKEVFEIPSGVNNT 75

Query: 276 QFKMTIARHLVGNKERGIKRILIPSATNY 362
            FK  +   L+        RI IP+  NY
Sbjct: 76  SFKYLVGVSLIQQNVPTANRITIPAKDNY 104


>UniRef50_Q8JRX1 Cluster: Capsid protein VP39; n=1; Phthorimaea
           operculella granulovirus|Rep: Capsid protein VP39 -
           Phthorimaea operculella granulovirus
          Length = 293

 Score = 54.8 bits (126), Expect = 8e-07
 Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
 Frame = +3

Query: 105 NRCIFASI-VSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRFKM--SKMVLPIFDED 269
           N CIF  +   FD C  Y   CS DA +   DG FICN HL K F++  SK  +P    D
Sbjct: 13  NYCIFQGVNYQFD-CDGYTRQCSEDARYSQLDGTFICNFHLGKYFRILKSKFEIPSGGVD 71

Query: 270 DNQFKMTIARHLVGNKERGI---KRILIPSATN 359
           +  FKM + + LV   E+     KR+LIP + +
Sbjct: 72  NRSFKMLVGQSLVPYAEKSTDPGKRLLIPMSVD 104


>UniRef50_Q8YXH3 Cluster: Zam protein; n=6; Cyanobacteria|Rep: Zam
           protein - Anabaena sp. (strain PCC 7120)
          Length = 783

 Score = 32.3 bits (70), Expect = 5.2
 Identities = 24/85 (28%), Positives = 43/85 (50%)
 Frame = -2

Query: 286 ILN*LSSSSKMGKTIFDILKRLMRWLLQINHPSS*YASGEHGDLYVMHASNDTMDAKMQR 107
           I+  L + + +G+ I +   RL R  LQ+N PS+     + G L  +  ++  + + +  
Sbjct: 389 IIERLQNLTTIGQAIKE--SRLARGSLQLNLPSNQNPYYDEGSLGAVLVNDSPVRSLLME 446

Query: 106 LTLICRGAIPTGISAILLPL*IWTT 32
           L L+    I T +SA+ +P  IW T
Sbjct: 447 LVLLVNELIATHLSALGIPA-IWRT 470


>UniRef50_A4F1M3 Cluster: Cytochrome P450-like protein; n=1;
           Roseobacter sp. SK209-2-6|Rep: Cytochrome P450-like
           protein - Roseobacter sp. SK209-2-6
          Length = 1565

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 413 RLVVPACIILFRLNTSLVIGCAWN*NSLDTSFF 315
           R+ V A  +LF L T+L++G  W  ++ D ++F
Sbjct: 676 RIFVIAAYVLFTLTTALIVGVKWGWSAADQTYF 708


>UniRef50_Q031F3 Cluster: Putative uncharacterized protein; n=1;
           Lactococcus lactis subsp. cremoris SK11|Rep: Putative
           uncharacterized protein - Lactococcus lactis subsp.
           cremoris (strain SK11)
          Length = 276

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 195 WFICNSHLIKRFKMSKMVLPIFDEDDNQFKMT-IARHLVGNKERGIKRILIP 347
           W +C   +I+ FK  K++ P F+E DN+F    I   L  N      +ILIP
Sbjct: 40  WQVCKIKMIRLFK-EKVINPSFNEYDNKFHFNLINEKLNKNFYNDFIKILIP 90


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,453,274
Number of Sequences: 1657284
Number of extensions: 8728120
Number of successful extensions: 17422
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17414
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)