Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f22
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504     27   7.3  
10_08_0156 - 15282111-15282752,15284787-15285719                       27   9.6  
06_03_0784 - 24557089-24557198,24557296-24560725                       27   9.6  

>04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504
          Length = 725

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 255 IFDEDDNQFKMTIARHLVG-NKERGIKRILIPSATNYQG 368
           +F+E DN++ + +A   VG      I+R++  S   Y G
Sbjct: 412 LFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNG 450


>10_08_0156 - 15282111-15282752,15284787-15285719
          Length = 524

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 6   DFFLNHKIAVVHIYNGNNMALMPVGMAPRQMR 101
           D FL+  I V+  + GN+MA  P G   RQ+R
Sbjct: 106 DRFLSTTIGVI-TFGGNDMAFAPYGERWRQLR 136


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 141 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDE--DDNQFKMTIARHLVGN 314
           A + Y      D Y    W IC SH+  + +++K +L   D+  D   F  ++ +  + N
Sbjct: 228 AQLIYNDKRIEDNYDLRAW-ICVSHVFDKVRITKEILTSIDKTIDLTNFNFSMLQEELKN 286

Query: 315 KERGIKRILI 344
           K +  K +L+
Sbjct: 287 KVKMKKFLLV 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,317
Number of Sequences: 37544
Number of extensions: 242635
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)