Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f21
         (572 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    24   1.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   9.9  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   9.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.9  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 418 IWSTSLRSAATLLTIANSLSRPFSK 492
           I+S  L +  TLL I +S+ RP+ K
Sbjct: 25  IYSFLLLTTLTLLVILSSIDRPYLK 49


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 485 NGRDKLFAI-VNNVAAERRLVDQIHICLIHNHCIEQYVVFVKNALV 351
           +G D   A+ V  V  E  +  +  IC IH    E Y +F K  L+
Sbjct: 248 SGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLM 293


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 485 NGRDKLFAI-VNNVAAERRLVDQIHICLIHNHCIEQYVVFVKNALV 351
           +G D   A+ V  V  E  +  +  IC IH    E Y +F K  L+
Sbjct: 248 SGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLM 293


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 224 YLFRKYYRMSYGRPMRQVYLFC*TQTGAS 310
           +L RK +  S+GRP         +QTG S
Sbjct: 238 HLERKAWVASFGRPKMTPQSLLPSQTGLS 266


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 265 WSSVRHSVIFSK*IIGSSASVSALTYNDAVAGA 167
           +SS+ HS+  S  ++ S   +   TY   + GA
Sbjct: 215 YSSLTHSLAASNHLLSSGQHLLQDTYKSMLPGA 247


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 425 RRVCVRQQRY*LLRTVYHGHFRNFYAQ 505
           ++ CV  Q    +  + +GH++NF +Q
Sbjct: 193 QKFCVVNQYIKQVCKLNNGHYKNFLSQ 219


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 425 RRVCVRQQRY*LLRTVYHGHFRNFYAQ 505
           ++ CV  Q    +  + +GH++NF +Q
Sbjct: 18  QKFCVVNQYIKQVCKLNNGHYKNFLSQ 44


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/51 (23%), Positives = 17/51 (33%)
 Frame = +1

Query: 70  ETNTTNSCLCNEKKAASAVSWRLAKRSCCICVRRRPQRRCTLAPTRTPTSL 222
           E +T N C  N  K   A+         C C  +   + C +     P  L
Sbjct: 413 EIDTINECDSNPCKHLDAICQDKLGDYACYCPPKHTGKNCEIYDRGFPGGL 463


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,115
Number of Sequences: 336
Number of extensions: 2780
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)