Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30f19
(465 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q38851 Cluster: DNA-binding protein; n=21; Spermatophyt... 38 0.11
UniRef50_O23890 Cluster: OSMYB2; n=2; Oryza sativa|Rep: OSMYB2 -... 38 0.11
UniRef50_Q43436 Cluster: MYB1; n=5; Malvoideae|Rep: MYB1 - Gossy... 37 0.19
UniRef50_P81395 Cluster: Myb-related protein 330; n=43; Spermato... 37 0.25
UniRef50_Q9SZP1 Cluster: Transcription repressor MYB4; n=7; Bras... 36 0.33
UniRef50_P20025 Cluster: Myb-related protein Zm38; n=11; Magnoli... 36 0.43
UniRef50_P20026 Cluster: Myb-related protein Hv1; n=15; Magnolio... 35 1.0
UniRef50_Q1DS91 Cluster: Predicted protein; n=1; Coccidioides im... 32 5.4
UniRef50_Q21YM3 Cluster: Sodium/hydrogen exchanger; n=4; Proteob... 31 9.4
>UniRef50_Q38851 Cluster: DNA-binding protein; n=21;
Spermatophyta|Rep: DNA-binding protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 236
Score = 37.9 bits (84), Expect = 0.11
Identities = 30/80 (37%), Positives = 38/80 (47%)
Frame = +2
Query: 23 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
SPCC AH+ K WT E L+ +I GE GC LP S G ++ G C
Sbjct: 4 SPCCEKAHT--NKGAWTK---EEDQRLVDYIRNHGE----GCWRSLPKSAG-LLRCGKSC 53
Query: 203 GLRRIHLLQPDETRLQLTSN 262
LR I+ L+PD R T +
Sbjct: 54 RLRWINYLRPDLKRGNFTDD 73
>UniRef50_O23890 Cluster: OSMYB2; n=2; Oryza sativa|Rep: OSMYB2 -
Oryza sativa (Rice)
Length = 276
Score = 37.9 bits (84), Expect = 0.11
Identities = 30/78 (38%), Positives = 37/78 (47%)
Frame = +2
Query: 23 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
SPCC AH+ K WT E L+ IN GE GC LP + G ++ G C
Sbjct: 4 SPCCEKAHT--NKGAWTK---EEDQRLIAHINQHGE----GCWRSLPKAAG-LLRCGKSC 53
Query: 203 GLRRIHLLQPDETRLQLT 256
LR I+ L+PD R T
Sbjct: 54 RLRWINYLRPDLKRGNFT 71
>UniRef50_Q43436 Cluster: MYB1; n=5; Malvoideae|Rep: MYB1 -
Gossypium hirsutum (Upland cotton) (Gossypium mexicanum)
Length = 294
Score = 37.1 bits (82), Expect = 0.19
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = +2
Query: 23 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
SPCC AH+ K WT E L+ +I GE GC LP + G ++ G C
Sbjct: 4 SPCCEKAHT--NKGAWTK---EEDQRLINYIRVHGE----GCWRSLPKAAG-LLRCGKSC 53
Query: 203 GLRRIHLLQPDETRLQLT 256
LR I+ L+PD R T
Sbjct: 54 RLRWINYLRPDLKRGNFT 71
>UniRef50_P81395 Cluster: Myb-related protein 330; n=43;
Spermatophyta|Rep: Myb-related protein 330 - Antirrhinum
majus (Garden snapdragon)
Length = 274
Score = 36.7 bits (81), Expect = 0.25
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = +2
Query: 23 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
SPCC AH+ K WT E L+ +I GE GC LP + G ++ G C
Sbjct: 4 SPCCEKAHT--NKGAWTK---EEDQRLINYIRAHGE----GCWRSLPKAAG-LLRCGKSC 53
Query: 203 GLRRIHLLQPDETRLQLT 256
LR I+ L+PD R T
Sbjct: 54 RLRWINYLRPDLKRGNFT 71
>UniRef50_Q9SZP1 Cluster: Transcription repressor MYB4; n=7;
Brassicaceae|Rep: Transcription repressor MYB4 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 282
Score = 36.3 bits (80), Expect = 0.33
Identities = 29/78 (37%), Positives = 37/78 (47%)
Frame = +2
Query: 23 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
SPCC AH+ K WT E L+ +I GE GC LP + G ++ G C
Sbjct: 4 SPCCEKAHT--NKGAWTK---EEDERLVAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53
Query: 203 GLRRIHLLQPDETRLQLT 256
LR I+ L+PD R T
Sbjct: 54 RLRWINYLRPDLKRGNFT 71
>UniRef50_P20025 Cluster: Myb-related protein Zm38; n=11;
Magnoliophyta|Rep: Myb-related protein Zm38 - Zea mays
(Maize)
Length = 255
Score = 35.9 bits (79), Expect = 0.43
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +2
Query: 23 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
SPCC AH+ + WT E L+ +I GE GC LP + G ++ G C
Sbjct: 4 SPCCEKAHT--NRGAWTK---EEDERLVAYIRAHGE----GCWRSLPKAAG-LLRCGKSC 53
Query: 203 GLRRIHLLQPDETRLQLTSN 262
LR I+ L+PD R T++
Sbjct: 54 RLRWINYLRPDLKRGNFTAD 73
>UniRef50_P20026 Cluster: Myb-related protein Hv1; n=15;
Magnoliophyta|Rep: Myb-related protein Hv1 - Hordeum
vulgare (Barley)
Length = 267
Score = 34.7 bits (76), Expect = 1.0
Identities = 28/74 (37%), Positives = 35/74 (47%)
Frame = +2
Query: 23 SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
SPCC AH+ K WT E L +I GE GC LP + G ++ G C
Sbjct: 4 SPCCEKAHT--NKGAWTK---EEDDRLTAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53
Query: 203 GLRRIHLLQPDETR 244
LR I+ L+PD R
Sbjct: 54 RLRWINYLRPDLKR 67
>UniRef50_Q1DS91 Cluster: Predicted protein; n=1; Coccidioides
immitis|Rep: Predicted protein - Coccidioides immitis
Length = 113
Score = 32.3 bits (70), Expect = 5.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 284 FSARKRAYYSSAVVLSRQVEEDECAGAHTVFPLALNHHSWPAT 156
+ R Y ++ L ++ E D AG V PL+LN WP++
Sbjct: 2 YGVRGTCYTANLSPLDKRPEVDSAAGTEEVEPLSLNRCGWPSS 44
>UniRef50_Q21YM3 Cluster: Sodium/hydrogen exchanger; n=4;
Proteobacteria|Rep: Sodium/hydrogen exchanger -
Rhodoferax ferrireducens (strain DSM 15236 / ATCC
BAA-621 / T118)
Length = 442
Score = 31.5 bits (68), Expect = 9.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 415 GFLVGFYLDVSLQETEFHPPTARFHAVNEPSVEHNSAAYIAQSN 284
GFL F+ V+L++TE A HA +E V + S A Q N
Sbjct: 252 GFLAVFFAAVALRQTELKLAKAAQHATDEGQVPNESDAKTGQRN 295
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,226,215
Number of Sequences: 1657284
Number of extensions: 7598009
Number of successful extensions: 20263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20261
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -