Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f19
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   0.81 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   4.3  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   7.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    24   9.9  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    24   9.9  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 287  EFSARKRAYYSSAVVLSRQVEEDECAGAHTVFPLALNHHSWP 162
            EFS +    Y S  +   Q+   +C G H  F L L+ H WP
Sbjct: 2048 EFSTQAVFRYPSRRLSLDQIPCKQC-GVHQDFDLCLHEHLWP 2088


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 87   KLVRCYCDLSIISVKLEQMVVEVGCRPAMVIECKREYRVGSG--AFIFFNLTRQDYS 251
            ++ R YC L++I  +LE+    V      VI C+R     S   +  + NL+  ++S
Sbjct: 982  EVARAYCQLAMIYHQLEKKEEAVELARKAVIVCERFLGFDSSETSLAYMNLSLYEFS 1038


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 156 LLLQPFVRVSPK*LINHSNNALTSSPLLVQHYFSQYECAL 37
           L L+PF ++  + L  +++N     PL++ H +    CA+
Sbjct: 311 LRLKPFGKMIHEFLWEYTDNRDHKGPLIISHIYLLIGCAI 350


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 152 SRLPASYGD*VQAGIPCGLRRIHLLQPDETRLQLT 256
           S  P +  D + A IPC   R+H  +P+ +R  +T
Sbjct: 167 SSSPKAVADYMAALIPCIKERMHDTKPEISRAAIT 201


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 325 SVEHNSAAYIAQSNSLLENEHI 260
           S++H +AAY    N +L N+H+
Sbjct: 706 SLKHPAAAYQKDDNFILVNDHL 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,368
Number of Sequences: 5004
Number of extensions: 31243
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)