Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f19
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004           38   0.004
09_06_0104 - 20888338-20888830,20888988-20889250                       36   0.012
05_04_0399 - 20955319-20955838,20955939-20956201                       36   0.016
01_06_1518 + 37925609-37925871,37925954-37926554                       36   0.016
03_05_0366 - 23505755-23506441                                         27   5.6  
12_02_0394 - 18563068-18563108,18563170-18563455,18565606-185656...    27   7.4  
05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440     27   9.8  
04_04_1349 - 32811733-32813040                                         27   9.8  

>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
          Length = 266

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 30/78 (38%), Positives = 37/78 (47%)
 Frame = +2

Query: 23  SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
           SPCC  AH+   K  WT    E    L+  IN  GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAHINQHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 203 GLRRIHLLQPDETRLQLT 256
            LR I+ L+PD  R   T
Sbjct: 54  RLRWINYLRPDLKRGNFT 71


>09_06_0104 - 20888338-20888830,20888988-20889250
          Length = 251

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 29/78 (37%), Positives = 37/78 (47%)
 Frame = +2

Query: 23  SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDDRLIAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 203 GLRRIHLLQPDETRLQLT 256
            LR I+ L+PD  R   T
Sbjct: 54  RLRWINYLRPDLKRGNFT 71


>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 28/80 (35%), Positives = 38/80 (47%)
 Frame = +2

Query: 23  SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAYIRAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 203 GLRRIHLLQPDETRLQLTSN 262
            LR ++ L+PD  R   T +
Sbjct: 54  RLRWMNYLRPDLKRGNFTDD 73


>01_06_1518 + 37925609-37925871,37925954-37926554
          Length = 287

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 28/80 (35%), Positives = 38/80 (47%)
 Frame = +2

Query: 23  SPCCTNAHSYCEK*CWTSKGLEVSALLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 202
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 203 GLRRIHLLQPDETRLQLTSN 262
            LR ++ L+PD  R   T +
Sbjct: 54  RLRWMNYLRPDLKRGNFTDD 73


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 408 RKPTGNWRVVSPPPTS 455
           R+PT  WRV SPPP S
Sbjct: 23  RQPTTWWRVDSPPPAS 38


>12_02_0394 -
           18563068-18563108,18563170-18563455,18565606-18565664,
           18567524-18567611
          Length = 157

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 319 EHNSAAYIAQSNSLLENEHITRQL*SCLVRLKKMNA 212
           +H+  ++   S+SL  N+ I     +C+V LKK NA
Sbjct: 102 QHDDGSWGINSSSLSVNKDILLSTLACVVALKKWNA 137


>05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440
          Length = 349

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 181 SASGNTVWAPAHSSSST 231
           S+  NT+W PA SSSS+
Sbjct: 213 SSQSNTIWRPASSSSSS 229


>04_04_1349 - 32811733-32813040
          Length = 435

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 326 RLVHGVEARGWRMKFGLLKADIEIEADEETYRELARRLA 442
           RL H   AR    +FGL    +   A  E  R +A RLA
Sbjct: 168 RLAHAAPARAVARRFGLPSPAVAARAFYEVCRTIADRLA 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,793,154
Number of Sequences: 37544
Number of extensions: 217429
Number of successful extensions: 560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)