Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f19
         (465 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094890-1|AAM11243.1|  517|Drosophila melanogaster RE59303p pro...    27   9.4  
AY060872-1|AAL28420.1|  390|Drosophila melanogaster GM03781p pro...    27   9.4  
AE014134-1581|AAF52726.1|  517|Drosophila melanogaster CG31886-P...    27   9.4  

>AY094890-1|AAM11243.1|  517|Drosophila melanogaster RE59303p
           protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 343 HAVNEPSVEHNSAAYIAQSNSLLENEHITR 254
           H+ N P+  HNS A+  + +S + NE  +R
Sbjct: 250 HSSNSPAHHHNSTAHHREHSSNITNEETSR 279


>AY060872-1|AAL28420.1|  390|Drosophila melanogaster GM03781p
           protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 343 HAVNEPSVEHNSAAYIAQSNSLLENEHITR 254
           H+ N P+  HNS A+  + +S + NE  +R
Sbjct: 123 HSSNSPAHHHNSTAHHREHSSNITNEETSR 152


>AE014134-1581|AAF52726.1|  517|Drosophila melanogaster CG31886-PA
           protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 343 HAVNEPSVEHNSAAYIAQSNSLLENEHITR 254
           H+ N P+  HNS A+  + +S + NE  +R
Sbjct: 250 HSSNSPAHHHNSTAHHREHSSNITNEETSR 279


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,516,127
Number of Sequences: 53049
Number of extensions: 362270
Number of successful extensions: 1084
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1559812275
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)