Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30f17
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0325 + 24109469-24109665,24110284-24110400,24110497-241109...    29   1.9  
07_03_1248 - 25165929-25166891,25169159-25169473                       28   4.4  
03_01_0441 + 3418622-3420988                                           28   4.4  
11_04_0145 + 14082864-14082946,14083060-14083267,14083383-140835...    27   5.8  
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912     27   7.6  
01_06_1041 - 34036748-34037137,34037238-34037664,34037775-340378...    27   7.6  

>05_05_0325 +
           24109469-24109665,24110284-24110400,24110497-24110914,
           24110997-24111416
          Length = 383

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 150 CTMSNIEPAHDLLDKVILRQLDLLEQKIKCELNI 251
           C MSNI PA   +  VI R   L  +K++C+  I
Sbjct: 87  CAMSNILPAMTFVMAVIFRMEKLELKKVRCQAKI 120


>07_03_1248 - 25165929-25166891,25169159-25169473
          Length = 425

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 120 YR*GFLDNQHCTMSNIEPAHDLLDKV 197
           Y+   L+  H ++  +EPAHD L+K+
Sbjct: 192 YQDMLLNQNHLSVHRVEPAHDQLEKI 217


>03_01_0441 + 3418622-3420988
          Length = 788

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 183 LLDKVILRQLDLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFS 362
           LL KV+ + + L++  I  E  + S  N+  +H+ +    +GQ S+S   +  +   +  
Sbjct: 177 LLKKVVAKHIPLIKMHI--EKKVCSEFNDWLVHIRRMAKQIGQVSISQASMARQKDEEMR 234

Query: 363 A 365
           A
Sbjct: 235 A 235


>11_04_0145 +
           14082864-14082946,14083060-14083267,14083383-14083599,
           14084170-14084276,14085521-14085674,14086848-14087029
          Length = 316

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -2

Query: 405 SSFHLLQLFYTLLKQKNR 352
           S FHL QLFY LLK   R
Sbjct: 127 SCFHLSQLFYPLLKDSGR 144


>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
          Length = 519

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 435 CFLCFGTILVSS 400
           CFLCFG +LVSS
Sbjct: 6   CFLCFGLLLVSS 17


>01_06_1041 -
           34036748-34037137,34037238-34037664,34037775-34037891,
           34038171-34038233,34038333-34038532
          Length = 398

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 150 CTMSNIEPAHDLLDKVILRQLDLLEQKIKCELNI 251
           C MSNI PA   +  VI R   +  +K++C+  +
Sbjct: 109 CAMSNILPAMTFVMAVIFRMEKVDLKKVRCQAKV 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,297
Number of Sequences: 37544
Number of extensions: 189222
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)